Literature DB >> 9050827

Choosing the right sugar: how polymerases select a nucleotide substrate.

C M Joyce1.   

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Year:  1997        PMID: 9050827      PMCID: PMC34142          DOI: 10.1073/pnas.94.5.1619

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


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  42 in total

1.  Structure of Taq polymerase with DNA at the polymerase active site.

Authors:  S H Eom; J Wang; T A Steitz
Journal:  Nature       Date:  1996-07-18       Impact factor: 49.962

2.  Deoxy- and dideoxynucleotide discrimination and identification of critical 5' nuclease domain residues of the DNA polymerase I from Mycobacterium tuberculosis.

Authors:  V Mizrahi; P Huberts
Journal:  Nucleic Acids Res       Date:  1996-12-15       Impact factor: 16.971

3.  An attempt to unify the structure of polymerases.

Authors:  M Delarue; O Poch; N Tordo; D Moras; P Argos
Journal:  Protein Eng       Date:  1990-05

4.  Crystal structure of the large fragment of Thermus aquaticus DNA polymerase I at 2.5-A resolution: structural basis for thermostability.

Authors:  S Korolev; M Nayal; W M Barnes; E Di Cera; G Waksman
Journal:  Proc Natl Acad Sci U S A       Date:  1995-09-26       Impact factor: 11.205

5.  Structure of large fragment of Escherichia coli DNA polymerase I complexed with dTMP.

Authors:  D L Ollis; P Brick; R Hamlin; N G Xuong; T A Steitz
Journal:  Nature       Date:  1985 Feb 28-Mar 6       Impact factor: 49.962

6.  Crystal structure of human immunodeficiency virus type 1 reverse transcriptase complexed with double-stranded DNA at 3.0 A resolution shows bent DNA.

Authors:  A Jacobo-Molina; J Ding; R G Nanni; A D Clark; X Lu; C Tantillo; R L Williams; G Kamer; A L Ferris; P Clark
Journal:  Proc Natl Acad Sci U S A       Date:  1993-07-01       Impact factor: 11.205

7.  Crystal structure of a deletion mutant of a tyrosyl-tRNA synthetase complexed with tyrosine.

Authors:  P Brick; D M Blow
Journal:  J Mol Biol       Date:  1987-03-20       Impact factor: 5.469

8.  A single residue in DNA polymerases of the Escherichia coli DNA polymerase I family is critical for distinguishing between deoxy- and dideoxyribonucleotides.

Authors:  S Tabor; C C Richardson
Journal:  Proc Natl Acad Sci U S A       Date:  1995-07-03       Impact factor: 11.205

9.  Insights into DNA polymerization mechanisms from structure and function analysis of HIV-1 reverse transcriptase.

Authors:  P H Patel; A Jacobo-Molina; J Ding; C Tantillo; A D Clark; R Raag; R G Nanni; S H Hughes; E Arnold
Journal:  Biochemistry       Date:  1995-04-25       Impact factor: 3.162

Review 10.  Locations of anti-AIDS drug binding sites and resistance mutations in the three-dimensional structure of HIV-1 reverse transcriptase. Implications for mechanisms of drug inhibition and resistance.

Authors:  C Tantillo; J Ding; A Jacobo-Molina; R G Nanni; P L Boyer; S H Hughes; R Pauwels; K Andries; P A Janssen; E Arnold
Journal:  J Mol Biol       Date:  1994-10-28       Impact factor: 5.469

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  106 in total

1.  Analysis of mutations at positions 115 and 116 in the dNTP binding site of HIV-1 reverse transcriptase.

Authors:  P L Boyer; S G Sarafianos; E Arnold; S H Hughes
Journal:  Proc Natl Acad Sci U S A       Date:  2000-03-28       Impact factor: 11.205

2.  Template nucleotide moieties required for de novo initiation of RNA synthesis by a recombinant viral RNA-dependent RNA polymerase.

Authors:  M J Kim; W Zhong; Z Hong; C C Kao
Journal:  J Virol       Date:  2000-11       Impact factor: 5.103

3.  Directed evolution of novel polymerase activities: mutation of a DNA polymerase into an efficient RNA polymerase.

Authors:  Gang Xia; Liangjing Chen; Takashi Sera; Ming Fa; Peter G Schultz; Floyd E Romesberg
Journal:  Proc Natl Acad Sci U S A       Date:  2002-05-14       Impact factor: 11.205

4.  Proofreading of ribonucleotides inserted into DNA by yeast DNA polymerase ɛ.

Authors:  Jessica S Williams; Anders R Clausen; Stephanie A Nick McElhinny; Brian E Watts; Erik Johansson; Thomas A Kunkel
Journal:  DNA Repair (Amst)       Date:  2012-06-08

Review 5.  Polymerases in nonhomologous end joining: building a bridge over broken chromosomes.

Authors:  Dale A Ramsden
Journal:  Antioxid Redox Signal       Date:  2010-10-28       Impact factor: 8.401

6.  The importance of being DNA.

Authors:  Alan B Clark; Thomas A Kunkel
Journal:  Cell Cycle       Date:  2010-11-15       Impact factor: 4.534

7.  Structural factors that determine selectivity of a high fidelity DNA polymerase for deoxy-, dideoxy-, and ribonucleotides.

Authors:  Weina Wang; Eugene Y Wu; Homme W Hellinga; Lorena S Beese
Journal:  J Biol Chem       Date:  2012-05-30       Impact factor: 5.157

8.  Role of the LEXE motif of protein-primed DNA polymerases in the interaction with the incoming nucleotide.

Authors:  Eugenia Santos; José M Lázaro; Patricia Pérez-Arnaiz; Margarita Salas; Miguel de Vega
Journal:  J Biol Chem       Date:  2013-12-09       Impact factor: 5.157

9.  Polymerase mu is a DNA-directed DNA/RNA polymerase.

Authors:  Stephanie A Nick McElhinny; Dale A Ramsden
Journal:  Mol Cell Biol       Date:  2003-04       Impact factor: 4.272

Review 10.  Directed polymerase evolution.

Authors:  Tingjian Chen; Floyd E Romesberg
Journal:  FEBS Lett       Date:  2013-11-05       Impact factor: 4.124

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