Literature DB >> 24211837

Directed polymerase evolution.

Tingjian Chen1, Floyd E Romesberg2.   

Abstract

Polymerases evolved in nature to synthesize DNA and RNA, and they underlie the storage and flow of genetic information in all cells. The availability of these enzymes for use at the bench has driven a revolution in biotechnology and medicinal research; however, polymerases did not evolve to function efficiently under the conditions required for some applications and their high substrate fidelity precludes their use for most applications that involve modified substrates. To circumvent these limitations, researchers have turned to directed evolution to tailor the properties and/or substrate repertoire of polymerases for different applications, and several systems have been developed for this purpose. These systems draw on different methods of creating a pool of randomly mutated polymerases and are differentiated by the process used to isolate the most fit members. A variety of polymerases have been evolved, providing new or improved functionality, as well as interesting new insight into the factors governing activity.
Copyright © 2013 Federation of European Biochemical Societies. Published by Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Directed evolution; Modified nucleotide; Polymerase; Protein engineering

Mesh:

Substances:

Year:  2013        PMID: 24211837      PMCID: PMC3982152          DOI: 10.1016/j.febslet.2013.10.040

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  100 in total

1.  Evolution of a T7 RNA polymerase variant that transcribes 2'-O-methyl RNA.

Authors:  Jijumon Chelliserrykattil; Andrew D Ellington
Journal:  Nat Biotechnol       Date:  2004-08-08       Impact factor: 54.908

2.  A DNA polymerase with increased reactivity for ribonucleotides and C5-modified deoxyribonucleotides.

Authors:  Nadine Staiger; Andreas Marx
Journal:  Chembiochem       Date:  2010-09-24       Impact factor: 3.164

3.  Taking fingerprints of DNA polymerases: multiplex enzyme profiling on DNA arrays.

Authors:  Ramon Kranaster; Andreas Marx
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

4.  Directed evolution of DNA polymerases for next-generation sequencing.

Authors:  Aaron M Leconte; Maha P Patel; Lauryn E Sass; Peter McInerney; Mirna Jarosz; Li Kung; Jayson L Bowers; Philip R Buzby; J William Efcavitch; Floyd E Romesberg
Journal:  Angew Chem Int Ed Engl       Date:  2010-08-09       Impact factor: 15.336

5.  Expanding the chemistry of DNA for in vitro selection.

Authors:  Jonathan D Vaught; Chris Bock; Jeff Carter; Tim Fitzwater; Matt Otis; Dan Schneider; Justin Rolando; Sheela Waugh; Sheri K Wilcox; Bruce E Eaton
Journal:  J Am Chem Soc       Date:  2010-03-31       Impact factor: 15.419

6.  Evolving a polymerase for hydrophobic base analogues.

Authors:  David Loakes; José Gallego; Vitor B Pinheiro; Eric T Kool; Philipp Holliger
Journal:  J Am Chem Soc       Date:  2009-10-21       Impact factor: 15.419

7.  Reconstructed evolutionary adaptive paths give polymerases accepting reversible terminators for sequencing and SNP detection.

Authors:  Fei Chen; Eric A Gaucher; Nicole A Leal; Daniel Hutter; Stephanie A Havemann; Sridhar Govindarajan; Eric A Ortlund; Steven A Benner
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-11       Impact factor: 11.205

8.  Structure of HIV-1 reverse transcriptase bound to an inhibitor active against mutant reverse transcriptases resistant to other nonnucleoside inhibitors.

Authors:  Janice D Pata; William G Stirtan; Steven W Goldstein; Thomas A Steitz
Journal:  Proc Natl Acad Sci U S A       Date:  2004-07-12       Impact factor: 11.205

Review 9.  Exploring protein fitness landscapes by directed evolution.

Authors:  Philip A Romero; Frances H Arnold
Journal:  Nat Rev Mol Cell Biol       Date:  2009-12       Impact factor: 94.444

10.  CyDNA: synthesis and replication of highly Cy-dye substituted DNA by an evolved polymerase.

Authors:  Nicola Ramsay; Ann-Sofie Jemth; Anthony Brown; Neal Crampton; Paul Dear; Philipp Holliger
Journal:  J Am Chem Soc       Date:  2010-04-14       Impact factor: 15.419

View more
  16 in total

Review 1.  The Toolbox for Modified Aptamers.

Authors:  Sergey A Lapa; Alexander V Chudinov; Edward N Timofeev
Journal:  Mol Biotechnol       Date:  2016-02       Impact factor: 2.695

2.  Promoter Length Affects the Initiation of T7 RNA Polymerase In Vitro: New Insights into Promoter/Polymerase Co-evolution.

Authors:  Ramesh Padmanabhan; Subha Narayan Sarcar; Dennis L Miller
Journal:  J Mol Evol       Date:  2019-12-21       Impact factor: 2.395

Review 3.  Nucleoside analogs in the study of the epitranscriptome.

Authors:  Cody M Palumbo; Peter A Beal
Journal:  Methods       Date:  2018-10-26       Impact factor: 3.608

Review 4.  Engineering Polymerases for New Functions.

Authors:  Timothy A Coulther; Hannah R Stern; Penny J Beuning
Journal:  Trends Biotechnol       Date:  2019-04-16       Impact factor: 19.536

5.  DNA Polymerase Activity Assay Using Near-infrared Fluorescent Labeled DNA Visualized by Acrylamide Gel Electrophoresis.

Authors:  Eliza L Lewis; Aaron M Leconte
Journal:  J Vis Exp       Date:  2017-10-06       Impact factor: 1.355

6.  Direct sensing of 5-methylcytosine by polymerase chain reaction.

Authors:  Joos Aschenbrenner; Matthias Drum; Hüsnü Topal; Markus Wieland; Andreas Marx
Journal:  Angew Chem Int Ed Engl       Date:  2014-06-12       Impact factor: 15.336

7.  RNA motif discovery by SHAPE and mutational profiling (SHAPE-MaP).

Authors:  Nathan A Siegfried; Steven Busan; Greggory M Rice; Julie A E Nelson; Kevin M Weeks
Journal:  Nat Methods       Date:  2014-07-13       Impact factor: 28.547

Review 8.  Modified Nucleoside Triphosphates for In-vitro Selection Techniques.

Authors:  María A Dellafiore; Javier M Montserrat; Adolfo M Iribarren
Journal:  Front Chem       Date:  2016-05-04       Impact factor: 5.221

9.  A general strategy for expanding polymerase function by droplet microfluidics.

Authors:  Andrew C Larsen; Matthew R Dunn; Andrew Hatch; Sujay P Sau; Cody Youngbull; John C Chaput
Journal:  Nat Commun       Date:  2016-04-05       Impact factor: 14.919

10.  Evolution of thermophilic DNA polymerases for the recognition and amplification of C2'-modified DNA.

Authors:  Tingjian Chen; Narupat Hongdilokkul; Zhixia Liu; Ramkrishna Adhikary; Shujian S Tsuen; Floyd E Romesberg
Journal:  Nat Chem       Date:  2016-04-18       Impact factor: 24.427

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.