Literature DB >> 20649463

Polymerases in nonhomologous end joining: building a bridge over broken chromosomes.

Dale A Ramsden1.   

Abstract

Repair of double-strand breaks in chromosomal DNA is essential. Unfortunately, a paradigm central to most DNA repair pathways--damaged DNA is replaced by polymerases, by using an intact, undamaged complementary strand as a template--no longer works. The nonhomologous end joining (NHEJ) pathway nevertheless still uses DNA polymerases to help repair double-strand breaks. Bacteria use a member of the archaeo-eukaryal primase superfamily, whereas eukaryotes use multiple members of the polymerase X family. These polymerases can, depending on the biologic context, accurately replace break-associated damage, mitigate loss of flanking DNA, or diversify products of repair. Polymerases specifically implicated in NHEJ are uniquely effective in these roles: relative to canonic polymerases, NHEJ polymerases have been engineered to do more with less.

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Year:  2010        PMID: 20649463      PMCID: PMC3113452          DOI: 10.1089/ars.2010.3429

Source DB:  PubMed          Journal:  Antioxid Redox Signal        ISSN: 1523-0864            Impact factor:   8.401


  109 in total

1.  Accurate in vitro end joining of a DNA double strand break with partially cohesive 3'-overhangs and 3'-phosphoglycolate termini: effect of Ku on repair fidelity.

Authors:  S Chen; K V Inamdar; P Pfeiffer; E Feldmann; M F Hannah; Y Yu; J W Lee; T Zhou; S P Lees-Miller; L F Povirk
Journal:  J Biol Chem       Date:  2001-04-17       Impact factor: 5.157

2.  Identification of bacterial homologues of the Ku DNA repair proteins.

Authors:  A J Doherty; S P Jackson; G R Weller
Journal:  FEBS Lett       Date:  2001-07-06       Impact factor: 4.124

Review 3.  Terminal deoxynucleotidyl transferase and repertoire development.

Authors:  C L Benedict; S Gilfillan; T H Thai; J F Kearney
Journal:  Immunol Rev       Date:  2000-06       Impact factor: 12.988

4.  Hydrocephalus, situs inversus, chronic sinusitis, and male infertility in DNA polymerase lambda-deficient mice: possible implication for the pathogenesis of immotile cilia syndrome.

Authors:  Yosuke Kobayashi; Miho Watanabe; Yuki Okada; Hirofumi Sawa; Hiroyuki Takai; Makoto Nakanishi; Yosuke Kawase; Hiroshi Suzuki; Kazuo Nagashima; Kyoji Ikeda; Noboru Motoyama
Journal:  Mol Cell Biol       Date:  2002-04       Impact factor: 4.272

5.  Crystal structures of a template-independent DNA polymerase: murine terminal deoxynucleotidyltransferase.

Authors:  M Delarue; J B Boulé; J Lescar; N Expert-Bezançon; N Jourdan; N Sukumar; F Rougeon; C Papanicolaou
Journal:  EMBO J       Date:  2002-02-01       Impact factor: 11.598

6.  Terminal deoxynucleotidyl transferase indiscriminately incorporates ribonucleotides and deoxyribonucleotides.

Authors:  J B Boulé; F Rougeon; C Papanicolaou
Journal:  J Biol Chem       Date:  2001-06-13       Impact factor: 5.157

7.  Highly frequent frameshift DNA synthesis by human DNA polymerase mu.

Authors:  Y Zhang; X Wu; F Yuan; Z Xie; Z Wang
Journal:  Mol Cell Biol       Date:  2001-12       Impact factor: 4.272

8.  Identification of an intrinsic 5'-deoxyribose-5-phosphate lyase activity in human DNA polymerase lambda: a possible role in base excision repair.

Authors:  M García-Díaz; K Bebenek; T A Kunkel; L Blanco
Journal:  J Biol Chem       Date:  2001-07-16       Impact factor: 5.157

9.  Prokaryotic homologs of the eukaryotic DNA-end-binding protein Ku, novel domains in the Ku protein and prediction of a prokaryotic double-strand break repair system.

Authors:  L Aravind; E V Koonin
Journal:  Genome Res       Date:  2001-08       Impact factor: 9.043

10.  The lyase activity of the DNA repair protein beta-polymerase protects from DNA-damage-induced cytotoxicity.

Authors:  R W Sobol; R Prasad; A Evenski; A Baker; X P Yang; J K Horton; S H Wilson
Journal:  Nature       Date:  2000-06-15       Impact factor: 49.962

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  21 in total

Review 1.  Coordination of DNA-PK activation and nuclease processing of DNA termini in NHEJ.

Authors:  Katherine S Pawelczak; Sara M Bennett; John J Turchi
Journal:  Antioxid Redox Signal       Date:  2010-12-02       Impact factor: 8.401

2.  Current advances in DNA repair: regulation of enzymes and pathways involved in maintaining genomic stability.

Authors:  Tracy M Neher; John J Turchi
Journal:  Antioxid Redox Signal       Date:  2011-03-31       Impact factor: 8.401

Review 3.  Choosing the right path: does DNA-PK help make the decision?

Authors:  Jessica A Neal; Katheryn Meek
Journal:  Mutat Res       Date:  2011-03-03       Impact factor: 2.433

4.  Requirement of POL3 and POL4 on non-homologous and microhomology-mediated end joining in rad50/xrs2 mutants of Saccharomyces cerevisiae.

Authors:  Alvaro Galli; Cecilia Y Chan; Liubov Parfenova; Tiziana Cervelli; Robert H Schiestl
Journal:  Mutagenesis       Date:  2015-06-29       Impact factor: 3.000

5.  Insights into eukaryotic primer synthesis from structures of the p48 subunit of human DNA primase.

Authors:  Sivaraja Vaithiyalingam; Diana R Arnett; Amit Aggarwal; Brandt F Eichman; Ellen Fanning; Walter J Chazin
Journal:  J Mol Biol       Date:  2013-11-13       Impact factor: 5.469

6.  DNA polymerase λ inactivation by oxidized abasic sites.

Authors:  Adam J Stevens; Lirui Guan; Katarzyna Bebenek; Thomas A Kunkel; Marc M Greenberg
Journal:  Biochemistry       Date:  2013-01-18       Impact factor: 3.162

Review 7.  Role of non-homologous end joining in V(D)J recombination.

Authors:  Shruti Malu; Vidyasagar Malshetty; Dailia Francis; Patricia Cortes
Journal:  Immunol Res       Date:  2012-12       Impact factor: 2.829

Review 8.  Bacterial genome instability.

Authors:  Elise Darmon; David R F Leach
Journal:  Microbiol Mol Biol Rev       Date:  2014-03       Impact factor: 11.056

9.  Resolution of complex ends by Nonhomologous end joining - better to be lucky than good?

Authors:  Natasha Tiffany Strande; Crystal Ann Waters; Dale A Ramsden
Journal:  Genome Integr       Date:  2012-12-31

10.  DNA-binding determinants promoting NHEJ by human Polμ.

Authors:  Maria Jose Martin; Raquel Juarez; Luis Blanco
Journal:  Nucleic Acids Res       Date:  2012-10-02       Impact factor: 16.971

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