Literature DB >> 7568114

Crystal structure of the large fragment of Thermus aquaticus DNA polymerase I at 2.5-A resolution: structural basis for thermostability.

S Korolev1, M Nayal, W M Barnes, E Di Cera, G Waksman.   

Abstract

The crystal structure of the large fragment of the Thermus aquaticus DNA polymerase (Klentaq1), determined at 2.5-A resolution, demonstrates a compact two-domain architecture. The C-terminal domain is identical in fold to the equivalent region of the Klenow fragment of Escherichia coli DNA polymerase I (Klenow pol I). Although the N-terminal domain of Klentaq1 differs greatly in sequence from its counterpart in Klenow pol I, it has clearly evolved from a common ancestor. The structure of Klentaq1 reveals the strategy utilized by this protein to maintain activity at high temperatures and provides the structural basis for future improvements of the enzyme.

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Year:  1995        PMID: 7568114      PMCID: PMC40965          DOI: 10.1073/pnas.92.20.9264

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  37 in total

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Authors:  T A Jones; J Y Zou; S W Cowan; M Kjeldgaard
Journal:  Acta Crystallogr A       Date:  1991-03-01       Impact factor: 2.290

2.  Role of proline residues in human lysozyme stability: a scanning calorimetric study combined with X-ray structure analysis of proline mutants.

Authors:  T Herning; K Yutani; K Inaka; R Kuroki; M Matsushima; M Kikuchi
Journal:  Biochemistry       Date:  1992-08-11       Impact factor: 3.162

3.  Crystal structure of bacteriophage T7 RNA polymerase at 3.3 A resolution.

Authors:  R Sousa; Y J Chung; J P Rose; B C Wang
Journal:  Nature       Date:  1993-08-12       Impact factor: 49.962

4.  Structure of DNA polymerase I Klenow fragment bound to duplex DNA.

Authors:  L S Beese; V Derbyshire; T A Steitz
Journal:  Science       Date:  1993-04-16       Impact factor: 47.728

5.  The fidelity of Taq polymerase catalyzing PCR is improved by an N-terminal deletion.

Authors:  W M Barnes
Journal:  Gene       Date:  1992-03-01       Impact factor: 3.688

6.  Crystal structure of human immunodeficiency virus type 1 reverse transcriptase complexed with double-stranded DNA at 3.0 A resolution shows bent DNA.

Authors:  A Jacobo-Molina; J Ding; R G Nanni; A D Clark; X Lu; C Tantillo; R L Williams; G Kamer; A L Ferris; P Clark
Journal:  Proc Natl Acad Sci U S A       Date:  1993-07-01       Impact factor: 11.205

7.  High-level expression, purification, and enzymatic characterization of full-length Thermus aquaticus DNA polymerase and a truncated form deficient in 5' to 3' exonuclease activity.

Authors:  F C Lawyer; S Stoffel; R K Saiki; S Y Chang; P A Landre; R D Abramson; D H Gelfand
Journal:  PCR Methods Appl       Date:  1993-05

8.  High-fidelity amplification using a thermostable DNA polymerase isolated from Pyrococcus furiosus.

Authors:  K S Lundberg; D D Shoemaker; M W Adams; J M Short; J A Sorge; E J Mathur
Journal:  Gene       Date:  1991-12-01       Impact factor: 3.688

9.  Crystal structure at 3.5 A resolution of HIV-1 reverse transcriptase complexed with an inhibitor.

Authors:  L A Kohlstaedt; J Wang; J M Friedman; P A Rice; T A Steitz
Journal:  Science       Date:  1992-06-26       Impact factor: 47.728

10.  Crystal structure of rat DNA polymerase beta: evidence for a common polymerase mechanism.

Authors:  M R Sawaya; H Pelletier; A Kumar; S H Wilson; J Kraut
Journal:  Science       Date:  1994-06-24       Impact factor: 47.728

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  47 in total

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Authors:  H Liu; J H Naismith; R T Hay
Journal:  J Virol       Date:  2000-12       Impact factor: 5.103

2.  Cold-sensitive mutants of Taq DNA polymerase provide a hot start for PCR.

Authors:  Milko B Kermekchiev; Anatoly Tzekov; Wayne M Barnes
Journal:  Nucleic Acids Res       Date:  2003-11-01       Impact factor: 16.971

3.  Comparative thermal denaturation of Thermus aquaticus and Escherichia coli type 1 DNA polymerases.

Authors:  Irene Karantzeni; Carmen Ruiz; Chin-Chi Liu; Vince J Licata
Journal:  Biochem J       Date:  2003-09-15       Impact factor: 3.857

4.  Thermodynamics of the binding of Thermus aquaticus DNA polymerase to primed-template DNA.

Authors:  Kausiki Datta; Vince J LiCata
Journal:  Nucleic Acids Res       Date:  2003-10-01       Impact factor: 16.971

5.  NMR structure of a variant 434 repressor DNA-binding domain devoid of hydroxyl groups.

Authors:  Hideo Iwai; Gerhard Wider; Kurt Wüthrich
Journal:  J Biomol NMR       Date:  2004-07       Impact factor: 2.835

6.  Amino acid templating mechanisms in selection of nucleotides opposite abasic sites by a family a DNA polymerase.

Authors:  Samra Obeid; Wolfram Welte; Kay Diederichs; Andreas Marx
Journal:  J Biol Chem       Date:  2012-02-07       Impact factor: 5.157

7.  Thermodynamics of the DNA structural selectivity of the Pol I DNA polymerases from Escherichia coli and Thermus aquaticus.

Authors:  Andy J Wowor; Kausiki Datta; Hiromi S Brown; Gregory S Thompson; Sreerupa Ray; Anne Grove; Vince J LiCata
Journal:  Biophys J       Date:  2010-06-16       Impact factor: 4.033

8.  Constitutive expression of fibronectin binding in Streptococcus pyogenes as a result of anaerobic activation of rofA.

Authors:  G C Fogg; M G Caparon
Journal:  J Bacteriol       Date:  1997-10       Impact factor: 3.490

9.  High-cell density shake-flask expression and rapid purification of the large fragment of Thermus aquaticus DNA polymerase I using a new chemically and temperature inducible expression plasmid in Escherichia coli.

Authors:  John W Brandis; Kenneth A Johnson
Journal:  Protein Expr Purif       Date:  2008-10-08       Impact factor: 1.650

10.  Evolving a polymerase for hydrophobic base analogues.

Authors:  David Loakes; José Gallego; Vitor B Pinheiro; Eric T Kool; Philipp Holliger
Journal:  J Am Chem Soc       Date:  2009-10-21       Impact factor: 15.419

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