Literature DB >> 9037016

Rapid determination of single base mismatch mutations in DNA hybrids by direct electric field control.

R G Sosnowski1, E Tu, W F Butler, J P O'Connell, M J Heller.   

Abstract

We have demonstrated that controlled electric fields can be used to regulate transport, concentration, hybridization, and denaturation of single- and double-stranded oligonucleotides. Discrimination among oligonucleotide hybrids with widely varying binding strengths may be attained by simple adjustment of the electric field strength. When this approach is used, electric field denaturation control allows single base pair mismatch discrimination to be carried out rapidly (<15 sec) and with high resolution. Electric field denaturation takes place at temperatures well below the melting point of the hybrids, and it may constitute a novel mechanism of DNA denaturation.

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Year:  1997        PMID: 9037016      PMCID: PMC19754          DOI: 10.1073/pnas.94.4.1119

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  10 in total

1.  Analyzing and comparing nucleic acid sequences by hybridization to arrays of oligonucleotides: evaluation using experimental models.

Authors:  E M Southern; U Maskos; J K Elder
Journal:  Genomics       Date:  1992-08       Impact factor: 5.736

2.  Light-directed, spatially addressable parallel chemical synthesis.

Authors:  S P Fodor; J L Read; M C Pirrung; L Stryer; A T Lu; D Solas
Journal:  Science       Date:  1991-02-15       Impact factor: 47.728

3.  Multiplexed biochemical assays with biological chips.

Authors:  S P Fodor; R P Rava; X C Huang; A C Pease; C P Holmes; C L Adams
Journal:  Nature       Date:  1993-08-05       Impact factor: 49.962

4.  Sequencing of megabase plus DNA by hybridization: theory of the method.

Authors:  R Drmanac; I Labat; I Brukner; R Crkvenjakov
Journal:  Genomics       Date:  1989-02       Impact factor: 5.736

5.  A novel method for nucleic acid sequence determination.

Authors:  W Bains; G C Smith
Journal:  J Theor Biol       Date:  1988-12-07       Impact factor: 2.691

6.  A microchip for quantitative detection of molecules utilizing luminescent and radioisotope reporter groups.

Authors:  M Eggers; M Hogan; R K Reich; J Lamture; D Ehrlich; M Hollis; B Kosicki; T Powdrill; K Beattie; S Smith
Journal:  Biotechniques       Date:  1994-09       Impact factor: 1.993

7.  Direct detection of nucleic acid hybridization on the surface of a charge coupled device.

Authors:  J B Lamture; K L Beattie; B E Burke; M D Eggers; D J Ehrlich; R Fowler; M A Hollis; B B Kosicki; R K Reich; S R Smith
Journal:  Nucleic Acids Res       Date:  1994-06-11       Impact factor: 16.971

8.  Single-base mutational analysis of cancer and genetic diseases using membrane bound modified oligonucleotides.

Authors:  Y Zhang; M Y Coyne; S G Will; C H Levenson; E S Kawasaki
Journal:  Nucleic Acids Res       Date:  1991-07-25       Impact factor: 16.971

9.  Direct fluorescence analysis of genetic polymorphisms by hybridization with oligonucleotide arrays on glass supports.

Authors:  Z Guo; R A Guilfoyle; A J Thiel; R Wang; L M Smith
Journal:  Nucleic Acids Res       Date:  1994-12-11       Impact factor: 16.971

10.  The use of synthetic oligonucleotides as hybridization probes. II. Hybridization of oligonucleotides of mixed sequence to rabbit beta-globin DNA.

Authors:  R B Wallace; M J Johnson; T Hirose; T Miyake; E H Kawashima; K Itakura
Journal:  Nucleic Acids Res       Date:  1981-02-25       Impact factor: 16.971

  10 in total
  49 in total

Review 1.  Mutational analysis using oligonucleotide microarrays.

Authors:  J G Hacia; F S Collins
Journal:  J Med Genet       Date:  1999-10       Impact factor: 6.318

2.  Electrostatic surface plasmon resonance: direct electric field-induced hybridization and denaturation in monolayer nucleic acid films and label-free discrimination of base mismatches.

Authors:  R J Heaton; A W Peterson; R M Georgiadis
Journal:  Proc Natl Acad Sci U S A       Date:  2001-03-20       Impact factor: 11.205

Review 3.  Automated mutation analysis.

Authors:  D Ravine
Journal:  J Inherit Metab Dis       Date:  1999-06       Impact factor: 4.982

4.  Rapid, high fidelity analysis of simple sequence repeats on an electronically active DNA microchip.

Authors:  R Radtkey; L Feng; M Muralhidar; M Duhon; D Canter; D DiPierro; S Fallon; E Tu; K McElfresh; M Nerenberg; R Sosnowski
Journal:  Nucleic Acids Res       Date:  2000-04-01       Impact factor: 16.971

Review 5.  From DNA biosensors to gene chips.

Authors:  J Wang
Journal:  Nucleic Acids Res       Date:  2000-08-15       Impact factor: 16.971

6.  Gene expression analysis with universal n-mer arrays.

Authors:  R Michael van Dam; Stephen R Quake
Journal:  Genome Res       Date:  2002-01       Impact factor: 9.043

7.  Quantitative detection of single nucleotide polymorphisms for a pooled sample by a bioluminometric assay coupled with modified primer extension reactions (BAMPER).

Authors:  G Zhou; M Kamahori; K Okano; G Chuan; K Harada; H Kambara
Journal:  Nucleic Acids Res       Date:  2001-10-01       Impact factor: 16.971

8.  Genotyping on a thermal gradient DNA chip.

Authors:  Tomoharu Kajiyama; Yuji Miyahara; Larry J Kricka; Peter Wilding; David J Graves; Saul Surrey; Paolo Fortina
Journal:  Genome Res       Date:  2003-03       Impact factor: 9.043

9.  Rapid parallel mutation scanning of gene fragments using a microelectronic protein-DNA chip format.

Authors:  Heike A Behrensdorf; Marc Pignot; Norbert Windhab; Andreas Kappel
Journal:  Nucleic Acids Res       Date:  2002-07-15       Impact factor: 16.971

10.  Multiplex PCR, amplicon size and hybridization efficiency on the NanoChip electronic microarray.

Authors:  Claus Børsting; Juan J Sanchez; Niels Morling
Journal:  Int J Legal Med       Date:  2004-01-14       Impact factor: 2.686

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