Literature DB >> 11259682

Electrostatic surface plasmon resonance: direct electric field-induced hybridization and denaturation in monolayer nucleic acid films and label-free discrimination of base mismatches.

R J Heaton1, A W Peterson, R M Georgiadis.   

Abstract

We demonstrate that in situ optical surface plasmon resonance spectroscopy can be used to monitor hybridization kinetics for unlabeled DNA in tethered monolayer nucleic acid films on gold in the presence of an applied electrostatic field. The dc field can enhance or retard hybridization and can also denature surface-immobilized DNA duplexes. Discrimination between matched and mismatched hybrids is achieved by simple adjustment of the electrode potential. Although the electric field at the interface is extremely large, the tethered single-stranded DNA thiol probes remain bound and can be reused for subsequent hybridization reactions without loss of efficiency. Only capacitive charging currents are drawn; redox reactions are avoided by maintaining the gold electrode potential within the ideally polarizable region. Because of potential-induced changes in the shape of the surface plasmon resonance curve, we account for the full curve rather than simply the shift in the resonance minimum.

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Year:  2001        PMID: 11259682      PMCID: PMC31115          DOI: 10.1073/pnas.071623998

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  4 in total

1.  High-resolution multiwavelength surface plasmon resonance spectroscopy for probing conformational and electronic changes in redox proteins.

Authors:  S Boussaad; J Pean; N J Tao
Journal:  Anal Chem       Date:  2000-01-01       Impact factor: 6.986

Review 2.  Genomics, gene expression and DNA arrays.

Authors:  D J Lockhart; E A Winzeler
Journal:  Nature       Date:  2000-06-15       Impact factor: 49.962

3.  Rapid determination of single base mismatch mutations in DNA hybrids by direct electric field control.

Authors:  R G Sosnowski; E Tu; W F Butler; J P O'Connell; M J Heller
Journal:  Proc Natl Acad Sci U S A       Date:  1997-02-18       Impact factor: 11.205

4.  Electrostatic interactions of redox cations with surface-immobilized and solution DNA.

Authors:  A B Steel; T M Herne; M J Tarlov
Journal:  Bioconjug Chem       Date:  1999 May-Jun       Impact factor: 4.774

  4 in total
  25 in total

1.  The effect of surface probe density on DNA hybridization.

Authors:  A W Peterson; R J Heaton; R M Georgiadis
Journal:  Nucleic Acids Res       Date:  2001-12-15       Impact factor: 16.971

2.  Detection of oligonucleotide hybridization at femtomolar level and sequence-specific gene analysis of the Arabidopsis thaliana leaf extract with an ultrasensitive surface plasmon resonance spectrometer.

Authors:  Fayi Song; Feimeng Zhou; Jun Wang; Nongjian Tao; Jianqiao Lin; Robert L Vellanoweth; Yvonne Morquecho; Janel Wheeler-Laidman
Journal:  Nucleic Acids Res       Date:  2002-07-15       Impact factor: 16.971

3.  Single-molecule detection of DNA hybridization.

Authors:  Mukta Singh-Zocchi; Sanhita Dixit; Vassili Ivanov; Giovanni Zocchi
Journal:  Proc Natl Acad Sci U S A       Date:  2003-06-13       Impact factor: 11.205

4.  An electrostatic model for DNA surface hybridization.

Authors:  Ian Y Wong; Nicholas A Melosh
Journal:  Biophys J       Date:  2010-06-16       Impact factor: 4.033

5.  Single-nucleotide polymorphism genotyping by nanoparticle-enhanced surface plasmon resonance imaging measurements of surface ligation reactions.

Authors:  Yuan Li; Alastair W Wark; Hye Jin Lee; Robert M Corn
Journal:  Anal Chem       Date:  2006-05-01       Impact factor: 6.986

6.  Fluorescence, XPS, and TOF-SIMS surface chemical state image analysis of DNA microarrays.

Authors:  Chi-Ying Lee; Gregory M Harbers; David W Grainger; Lara J Gamble; David G Castner
Journal:  J Am Chem Soc       Date:  2007-07-11       Impact factor: 15.419

7.  3D single-molecule tracking enables direct hybridization kinetics measurement in solution.

Authors:  Cong Liu; Judy M Obliosca; Yen-Liang Liu; Yu-An Chen; Ning Jiang; Hsin-Chih Yeh
Journal:  Nanoscale       Date:  2017-05-04       Impact factor: 7.790

8.  Accurate zygote-specific discrimination of single-nucleotide polymorphisms using microfluidic electrochemical DNA melting curves.

Authors:  Allen H J Yang; Kuangwen Hsieh; Adriana S Patterson; B Scott Ferguson; Michael Eisenstein; Kevin W Plaxco; H Tom Soh
Journal:  Angew Chem Int Ed Engl       Date:  2014-02-12       Impact factor: 15.336

Review 9.  Real-time DNA microarrays: reality check.

Authors:  Alexander Chagovetz; Steve Blair
Journal:  Biochem Soc Trans       Date:  2009-04       Impact factor: 5.407

10.  Real-time DNA microarray analysis.

Authors:  Arjang Hassibi; Haris Vikalo; José Luis Riechmann; Babak Hassibi
Journal:  Nucleic Acids Res       Date:  2009-08-31       Impact factor: 16.971

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