Literature DB >> 8990161

From oligonucleotide shapes to genomic SELEX: novel biological regulatory loops.

L Gold1, D Brown, Y He, T Shtatland, B S Singer, Y Wu.   

Abstract

The SELEX method and oligonucleotide combinatorial chemistry discovery process yields high-affinity/high-specificity ligands for virtually any molecular target. Typically, the enormous starting libraries used in the SELEX process contain 10(14)-10(15) sequences. We now ask if the smaller sequences, complexity of extant organisms, and evolutionary history provide useful interactions between oligonucleotides and at least some unexpected targets. That is, do organisms contain a robust "linkage map" between their oligonucleotides and proteins and/or small molecules that enriches life?

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Year:  1997        PMID: 8990161      PMCID: PMC19236          DOI: 10.1073/pnas.94.1.59

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  37 in total

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Journal:  Nucleic Acids Res       Date:  1994-04-11       Impact factor: 16.971

6.  Studies on FGF-2: nuclear localization and function of high molecular weight forms and receptor binding in the absence of heparin.

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Journal:  Mol Reprod Dev       Date:  1994-09       Impact factor: 2.609

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Journal:  Proc Natl Acad Sci U S A       Date:  1984-11       Impact factor: 11.205

8.  Potent 2'-amino-2'-deoxypyrimidine RNA inhibitors of basic fibroblast growth factor.

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Journal:  Biochemistry       Date:  1995-09-12       Impact factor: 3.162

9.  Bacteriophage T4 regA protein. Purification of a translational repressor.

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10.  Translational regulation: identification of the site on bacteriophage T4 rIIB mRNA recognized by the regA gene function.

Authors:  J Karam; L Gold; B S Singer; M Dawson
Journal:  Proc Natl Acad Sci U S A       Date:  1981-08       Impact factor: 11.205

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  33 in total

1.  SELEX_DB: an activated database on selected randomized DNA/RNA sequences addressed to genomic sequence annotation.

Authors:  J V Ponomarenko; G V Orlova; M P Ponomarenko; S V Lavryushev; A S Frolov; S V Zybova; N A Kolchanov
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Interactions of Escherichia coli RNA with bacteriophage MS2 coat protein: genomic SELEX.

Authors:  T Shtatland; S C Gill; B E Javornik; H E Johansson; B S Singer; O C Uhlenbeck; D A Zichi; L Gold
Journal:  Nucleic Acids Res       Date:  2000-11-01       Impact factor: 16.971

3.  In vitro selection of exonic splicing enhancer sequences: identification of novel CD44 enhancers.

Authors:  G Woerfel; A Bindereif
Journal:  Nucleic Acids Res       Date:  2001-08-01       Impact factor: 16.971

4.  Automated selection of aptamers against protein targets translated in vitro: from gene to aptamer.

Authors:  J Colin Cox; Andrew Hayhurst; Jay Hesselberth; Travis S Bayer; George Georgiou; Andrew D Ellington
Journal:  Nucleic Acids Res       Date:  2002-10-15       Impact factor: 16.971

5.  Retroviral constitutive transport element evolved from cellular TAP(NXF1)-binding sequences.

Authors:  A S Zolotukhin; D Michalowski; S Smulevitch; B K Felber
Journal:  J Virol       Date:  2001-06       Impact factor: 5.103

6.  Evolution of aptamers with a new specificity and new secondary structures from an ATP aptamer.

Authors:  Zhen Huang; Jack W Szostak
Journal:  RNA       Date:  2003-12       Impact factor: 4.942

7.  Transcript analysis reveals an extended regulon and the importance of protein-protein co-operativity for the Escherichia coli methionine repressor.

Authors:  Ferenc Marincs; Iain W Manfield; Jonathan A Stead; Kenneth J McDowall; Peter G Stockley
Journal:  Biochem J       Date:  2006-06-01       Impact factor: 3.857

8.  Light-regulated RNA-small molecule interactions.

Authors:  Douglas D Young; Alexander Deiters
Journal:  Chembiochem       Date:  2008-05-23       Impact factor: 3.164

Review 9.  Aptamers and the RNA world, past and present.

Authors:  Larry Gold; Nebojsa Janjic; Thale Jarvis; Dan Schneider; Jeffrey J Walker; Sheri K Wilcox; Dom Zichi
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-03-01       Impact factor: 10.005

10.  Development of single-stranded DNA aptamers for specific Bisphenol a detection.

Authors:  Minjoung Jo; Ji-Young Ahn; Joohyung Lee; Seram Lee; Sun Woo Hong; Jae-Wook Yoo; Jeehye Kang; Pooja Dua; Dong-Ki Lee; Seunghun Hong; Soyoun Kim
Journal:  Oligonucleotides       Date:  2011-03-17
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