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Literature DB >> 10592226

SELEX_DB: an activated database on selected randomized DNA/RNA sequences addressed to genomic sequence annotation.

J V Ponomarenko¹, G V Orlova, M P Ponomarenko, S V Lavryushev, A S Frolov, S V Zybova, N A Kolchanov.

Abstract

SELEX_DB is a novel curated database on selected randomized DNA/RNA sequences designed for accumulation of experimental data on functional site sequences obtained by using SELEX and SELEX-like technologies from the pools of random sequences. This database also contains the programs for DNA/RNA functional site recognition within arbitrary nucleotide sequences. The first release of SELEX_DB has been installed under SRS and is available through the WWW at http://wwwmgs.bionet.nsc.ru/mgs/systems/selex/

Entities: Disease

Mesh：

Substances：
RNA
DNA

Year: 2000 PMID： 10592226 PMCID： PMC102392 DOI： 10.1093/nar/28.1.205

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

46 in total

1. Identification of functional elements in unaligned nucleic acid sequences by a novel tuple search algorithm.

Authors: F Wolfertstetter; K Frech; G Herrmann; T Werner
Journal: Comput Appl Biosci Date: 1996-02

2. SIGNAL SCAN 4.0: additional databases and sequence formats.

Authors: D S Prestridge
Journal: Comput Appl Biosci Date: 1996-04

3. ConsInspector 3.0: new library and enhanced functionality.

Authors: K Frech; P Dietze; T Werner
Journal: Comput Appl Biosci Date: 1997-02

4. PromFD 1.0: a computer program that predicts eukaryotic pol II promoters using strings and IMD matrices.

Authors: Q K Chen; G Z Hertz; G D Stormo
Journal: Comput Appl Biosci Date: 1997-02

5. The neuronal RNA binding protein Nova-1 recognizes specific RNA targets in vitro and in vivo.

Authors: R J Buckanovich; R B Darnell
Journal: Mol Cell Biol Date: 1997-06 Impact factor: 4.272

6. Binding of YY1 to a site overlapping a weak TATA box is essential for transcription from the uteroglobin promoter in endometrial cells.

Authors: J Klug; M Beato
Journal: Mol Cell Biol Date: 1996-11 Impact factor: 4.272

7. MATRIX SEARCH 1.0: a computer program that scans DNA sequences for transcriptional elements using a database of weight matrices.

Authors: Q K Chen; G Z Hertz; G D Stormo
Journal: Comput Appl Biosci Date: 1995-10

8. The preference for GT-rich DNA by the yeast Rad51 protein defines a set of universal pairing sequences.

Authors: R B Tracy; J K Baumohl; S C Kowalczykowski
Journal: Genes Dev Date: 1997-12-15 Impact factor: 11.361

9. Identification of preferred hTBP DNA binding sites by the combinatorial method REPSA.

Authors: P Hardenbol; J C Wang; M W Van Dyke
Journal: Nucleic Acids Res Date: 1997-08-15 Impact factor: 16.971

Review 10. From oligonucleotide shapes to genomic SELEX: novel biological regulatory loops.

Authors: L Gold; D Brown; Y He; T Shtatland; B S Singer; Y Wu
Journal: Proc Natl Acad Sci U S A Date: 1997-01-07 Impact factor: 11.205

7 in total

1. ACTIVITY: a database on DNA/RNA sites activity adapted to apply sequence-activity relationships from one system to another.

Authors: J V Ponomarenko; D P Furman; A S Frolov; N L Podkolodny; G V Orlova; M P Ponomarenko; N A Kolchanov; A Sarai
Journal: Nucleic Acids Res Date: 2001-01-01 Impact factor: 16.971

2. SELEX_DB: a database on in vitro selected oligomers adapted for recognizing natural sites and for analyzing both SNPs and site-directed mutagenesis data.

Authors: Julia V Ponomarenko; Galina V Orlova; Anatoly S Frolov; Mikhail S Gelfand; Mikhail P Ponomarenko
Journal: Nucleic Acids Res Date: 2002-01-01 Impact factor: 16.971