Literature DB >> 21441582

Aptamers and the RNA world, past and present.

Larry Gold1, Nebojsa Janjic, Thale Jarvis, Dan Schneider, Jeffrey J Walker, Sheri K Wilcox, Dom Zichi.   

Abstract

Aptamers and the SELEX process were discovered over two decades ago. These discoveries have spawned a productive academic and commercial industry. The collective results provide insights into biology, past and present, through an in vitro evolutionary exploration of the nature of nucleic acids and their potential roles in ancient life. Aptamers have helped usher in an RNA renaissance. Here we explore some of the evolution of the aptamer field and the insights it has provided for conceptualizing an RNA world, from its nascence to our current endeavor employing aptamers in human proteomics to discover biomarkers of health and disease.

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Year:  2012        PMID: 21441582      PMCID: PMC3282410          DOI: 10.1101/cshperspect.a003582

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Biol        ISSN: 1943-0264            Impact factor:   10.005


  59 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2000-07-18       Impact factor: 11.205

2.  Intrinsic noise in gene regulatory networks.

Authors:  M Thattai; A van Oudenaarden
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-03       Impact factor: 11.205

Review 3.  Noise in gene expression: origins, consequences, and control.

Authors:  Jonathan M Raser; Erin K O'Shea
Journal:  Science       Date:  2005-09-23       Impact factor: 47.728

4.  High-affinity RNA ligands to basic fibroblast growth factor inhibit receptor binding.

Authors:  D Jellinek; C K Lynott; D B Rifkin; N Janjić
Journal:  Proc Natl Acad Sci U S A       Date:  1993-12-01       Impact factor: 11.205

5.  Mirror-image RNA that binds D-adenosine.

Authors:  S Klussmann; A Nolte; R Bald; V A Erdmann; J P Fürste
Journal:  Nat Biotechnol       Date:  1996-09       Impact factor: 54.908

Review 6.  Pegaptanib: the first antiangiogenic agent approved for neovascular macular degeneration.

Authors:  Sheila A Doggrell
Journal:  Expert Opin Pharmacother       Date:  2005-07       Impact factor: 3.889

7.  Crystal structure of an RNA tertiary domain essential to HCV IRES-mediated translation initiation.

Authors:  Jeffrey S Kieft; Kaihong Zhou; Angie Grech; Ronald Jubin; Jennifer A Doudna
Journal:  Nat Struct Biol       Date:  2002-05

8.  2'-Fluoropyrimidine RNA-based aptamers to the 165-amino acid form of vascular endothelial growth factor (VEGF165). Inhibition of receptor binding and VEGF-induced vascular permeability through interactions requiring the exon 7-encoded domain.

Authors:  J Ruckman; L S Green; J Beeson; S Waugh; W L Gillette; D D Henninger; L Claesson-Welsh; N Janjić
Journal:  J Biol Chem       Date:  1998-08-07       Impact factor: 5.157

9.  RNA pseudoknots that inhibit human immunodeficiency virus type 1 reverse transcriptase.

Authors:  C Tuerk; S MacDougal; L Gold
Journal:  Proc Natl Acad Sci U S A       Date:  1992-08-01       Impact factor: 11.205

10.  A model of the statistical power of comparative genome sequence analysis.

Authors:  Sean R Eddy
Journal:  PLoS Biol       Date:  2005-01-04       Impact factor: 8.029

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  39 in total

1.  Mapping L1 ligase ribozyme conformational switch.

Authors:  George M Giambaşu; Tai-Sung Lee; William G Scott; Darrin M York
Journal:  J Mol Biol       Date:  2012-07-03       Impact factor: 5.469

Review 2.  Analysis of In Vitro Aptamer Selection Parameters.

Authors:  Maureen McKeague; Erin M McConnell; Jose Cruz-Toledo; Elyse D Bernard; Amanda Pach; Emily Mastronardi; Xueru Zhang; Michael Beking; Tariq Francis; Amanda Giamberardino; Ashley Cabecinha; Annamaria Ruscito; Rocio Aranda-Rodriguez; Michel Dumontier; Maria C DeRosa
Journal:  J Mol Evol       Date:  2015-11-03       Impact factor: 2.395

Review 3.  Aptamers: multifunctional molecules for biomedical research.

Authors:  Jayeeta Banerjee; Marit Nilsen-Hamilton
Journal:  J Mol Med (Berl)       Date:  2013-09-18       Impact factor: 4.599

4.  The RNA worlds in context.

Authors:  Thomas R Cech
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-07-01       Impact factor: 10.005

5.  Reproducibility: Standardize antibodies used in research.

Authors:  Andrew Bradbury; Andreas Plückthun
Journal:  Nature       Date:  2015-02-05       Impact factor: 49.962

Review 6.  Aptamer-based approaches for the detection of waterborne pathogens.

Authors:  Archana Vishwakarma; Roshni Lal; Mohandass Ramya
Journal:  Int Microbiol       Date:  2021-01-06       Impact factor: 2.479

7.  RNA aptamers and their therapeutic and diagnostic applications.

Authors:  Katherine Germer; Marissa Leonard; Xiaoting Zhang
Journal:  Int J Biochem Mol Biol       Date:  2013-03-31

8.  Aptamers: problems, solutions and prospects.

Authors:  A V Lakhin; V Z Tarantul; L V Gening
Journal:  Acta Naturae       Date:  2013-10       Impact factor: 1.845

Review 9.  A brave new world of RNA-binding proteins.

Authors:  Matthias W Hentze; Alfredo Castello; Thomas Schwarzl; Thomas Preiss
Journal:  Nat Rev Mol Cell Biol       Date:  2018-01-17       Impact factor: 94.444

Review 10.  The persistent contributions of RNA to eukaryotic gen(om)e architecture and cellular function.

Authors:  Jürgen Brosius
Journal:  Cold Spring Harb Perspect Biol       Date:  2014-07-31       Impact factor: 10.005

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