Literature DB >> 8975603

Relief of amplification inhibition in PCR with bovine serum albumin or T4 gene 32 protein.

C A Kreader1.   

Abstract

The benefits of adding bovine serum albumin (BSA) or T4 gene 32 protein (gp32) to PCR were evaluated with reaction mixtures containing substances that inhibit amplification. Whereas 10- to 1,000-fold more FeCl3, hemin, fulvic acids, humic acids, tannic acids, or extracts from feces, freshwater, or marine water were accommodated in PCR when either 400 ng of BSA per microl or 150 ng of gp32 per microl was included in the reactions, neither BSA nor gp32 relieved interference significantly when minimum inhibitory levels of bile salts, bilirubin, EDTA, NaCl, sodium dodecyl sulfate, or Triton X-100 were present. Use of BSA and gp32 together offered no more relief of inhibition than either alone at its optimal level, and neither protein had any noticeable effect on amplification in the absence of inhibitors.

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Year:  1996        PMID: 8975603      PMCID: PMC167874          DOI: 10.1128/aem.62.3.1102-1106.1996

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  18 in total

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2.  Improved yields of long PCR products using gene 32 protein.

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3.  The effects of plant polysaccharides and buffer additives on PCR.

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5.  PCR based diagnosis in the presence of 8% (v/v) blood.

Authors:  M Panaccio; A Lew
Journal:  Nucleic Acids Res       Date:  1991-03-11       Impact factor: 16.971

6.  Simple, rapid method for direct isolation of nucleic acids from aquatic environments.

Authors:  C C Somerville; I T Knight; W L Straube; R R Colwell
Journal:  Appl Environ Microbiol       Date:  1989-03       Impact factor: 4.792

7.  Overcoming problems of phenolics and quinones in the isolation of plant enzymes and organelles.

Authors:  W D Loomis
Journal:  Methods Enzymol       Date:  1974       Impact factor: 1.600

8.  Rapid method for separation of bacterial DNA from humic substances in sediments for polymerase chain reaction.

Authors:  Y L Tsai; B H Olson
Journal:  Appl Environ Microbiol       Date:  1992-07       Impact factor: 4.792

9.  A rapid polymerase chain reaction (PCR)-based assay for the identification of Listeria monocytogenes in food samples.

Authors:  L Rossen; K Holmstrøm; J E Olsen; O F Rasmussen
Journal:  Int J Food Microbiol       Date:  1991-11       Impact factor: 5.277

10.  Design and evaluation of Bacteroides DNA probes for the specific detection of human fecal pollution.

Authors:  C A Kreader
Journal:  Appl Environ Microbiol       Date:  1995-04       Impact factor: 4.792

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  159 in total

1.  Purification and characterization of PCR-inhibitory components in blood cells.

Authors:  W A Al-Soud; P Rådström
Journal:  J Clin Microbiol       Date:  2001-02       Impact factor: 5.948

2.  Genus- and species-specific PCR-based detection of dairy propionibacteria in environmental samples by using primers targeted to the genes encoding 16S rRNA.

Authors:  F Rossi; S Torriani; F Dellaglio
Journal:  Appl Environ Microbiol       Date:  1999-09       Impact factor: 4.792

3.  Identification of nonpoint sources of fecal pollution in coastal waters by using host-specific 16S ribosomal DNA genetic markers from fecal anaerobes.

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Journal:  Appl Environ Microbiol       Date:  2000-04       Impact factor: 4.792

4.  Effects of agronomic treatments on structure and function of ammonia-oxidizing communities.

Authors:  C J Phillips; D Harris; S L Dollhopf; K L Gross; J I Prosser; E A Paul
Journal:  Appl Environ Microbiol       Date:  2000-12       Impact factor: 4.792

5.  Effects of amplification facilitators on diagnostic PCR in the presence of blood, feces, and meat.

Authors:  W Abu Al-Soud; P Rådström
Journal:  J Clin Microbiol       Date:  2000-12       Impact factor: 5.948

6.  Detection of Legionella pneumophila using a real-time PCR hybridization assay.

Authors:  A L Ballard; N K Fry; L Chan; S B Surman; J V Lee; T G Harrison; K J Towner
Journal:  J Clin Microbiol       Date:  2000-11       Impact factor: 5.948

7.  Direct identification of bacteria from positive blood cultures by amplification and sequencing of the 16S rRNA gene: evaluation of BACTEC 9240 instrument true-positive and false-positive results.

Authors:  Q Qian; Y W Tang; C P Kolbert; C A Torgerson; J G Hughes; E A Vetter; W S Harmsen; S O Montgomery; F R Cockerill; D H Persing
Journal:  J Clin Microbiol       Date:  2001-10       Impact factor: 5.948

Review 8.  Pre-PCR processing: strategies to generate PCR-compatible samples.

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Journal:  Mol Biotechnol       Date:  2004-02       Impact factor: 2.695

9.  Culture-independent molecular analysis of microbial constituents of the healthy human outer ear.

Authors:  Daniel N Frank; George B Spiegelman; William Davis; Eileen Wagner; Eric Lyons; Norman R Pace
Journal:  J Clin Microbiol       Date:  2003-01       Impact factor: 5.948

10.  Early detection and identification of commonly encountered Candida species from simulated blood cultures by using a real-time PCR-based assay.

Authors:  Younes Maaroufi; Jean-Marc De Bruyne; Valérie Duchateau; Aspasia Georgala; Françoise Crokaert
Journal:  J Mol Diagn       Date:  2004-05       Impact factor: 5.568

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