Literature DB >> 1571138

The effects of plant polysaccharides and buffer additives on PCR.

T Demeke1, R P Adams.   

Abstract

A survey of the inhibitory effects of various plant polysaccharides on PCR amplification of a 974-bp section of rbcL in spinach revealed that most of the polysaccharides tested (arabinogalactan, carrageenan, dextran, gum guar, gum karaya, gum locust bean, inulin, mannan, pectin, starch and xylan) were not inhibitory. In contrast, two of the acidic polysaccharides (dextran sulfate and gum ghatti) were inhibitory. The addition of 0.5% Tween 20 reversed the inhibitory effects of gum ghatti (polysaccharide:DNA ratio of 500:1). The inhibitory effect of dextran sulfate (50:1) could be reversed by the addition of Tween 20 (0.25% or 0.5%), DMSO (5%) or polyethylene glycol 400 (5%), but none of these three additives were effective at a 100:1 ratio of dextran sulfate/DNA.

Entities:  

Mesh:

Substances:

Year:  1992        PMID: 1571138

Source DB:  PubMed          Journal:  Biotechniques        ISSN: 0736-6205            Impact factor:   1.993


  41 in total

1.  Inhibitory effects of collagen on the PCR for detection of Clostridium perfringens.

Authors:  S Kim; R G Labbe; S Ryu
Journal:  Appl Environ Microbiol       Date:  2000-03       Impact factor: 4.792

Review 2.  Pre-PCR processing: strategies to generate PCR-compatible samples.

Authors:  Peter Rådström; Rickard Knutsson; Petra Wolffs; Maria Lövenklev; Charlotta Löfström
Journal:  Mol Biotechnol       Date:  2004-02       Impact factor: 2.695

3.  Does extraction of DNA and RNA by magnetic fishing work for diverse plant species?

Authors:  Jaana Vuosku; Laura Jaakola; Soile Jokipii; Katja Karppinen; Terttu Kämäräinen; Veli-Pekka Pelkonen; Anne Jokela; Tytti Sarjala; Anja Hohtola; Hely Häggman
Journal:  Mol Biotechnol       Date:  2004-07       Impact factor: 2.695

4.  Early detection and identification of commonly encountered Candida species from simulated blood cultures by using a real-time PCR-based assay.

Authors:  Younes Maaroufi; Jean-Marc De Bruyne; Valérie Duchateau; Aspasia Georgala; Françoise Crokaert
Journal:  J Mol Diagn       Date:  2004-05       Impact factor: 5.568

Review 5.  Microcoding: the second step in DNA barcoding.

Authors:  R C Summerbell; C A Lévesque; K A Seifert; M Bovers; J W Fell; M R Diaz; T Boekhout; G S de Hoog; J Stalpers; P W Crous
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2005-10-29       Impact factor: 6.237

6.  PCR inhibitor levels in concentrates of biosolid samples predicted by a new method based on excitation-emission matrix spectroscopy.

Authors:  Channah Rock; Absar Alum; Morteza Abbaszadegan
Journal:  Appl Environ Microbiol       Date:  2010-10-22       Impact factor: 4.792

7.  RAPD DNA fingerprints and terpenoids: clues to past migrations of Juniperus in Arabia and east Africa.

Authors:  R P Adams; T Demeke; H A Abulfatih
Journal:  Theor Appl Genet       Date:  1993-10       Impact factor: 5.699

8.  Inheritance of restriction fragment length polymorphisms and random amplified polymorphic DNAs in coastal Douglas-fir.

Authors:  K D Jermstad; A M Reem; J R Henifin; N C Wheeler; D B Neale
Journal:  Theor Appl Genet       Date:  1994-11       Impact factor: 5.699

Review 9.  Inhibition and facilitation of nucleic acid amplification.

Authors:  I G Wilson
Journal:  Appl Environ Microbiol       Date:  1997-10       Impact factor: 4.792

10.  Quantitative assay of hepatitis C virus RNA using an automated extraction system for specific capture with probes and paramagnetic particle separation.

Authors:  Hayato Miyachi; Atsuko Masukawa; Satomi Asai; Toshiaki Miura; Shigeru Tamatsukuri; Toru Hirose; Yasuhiko Ando
Journal:  J Clin Microbiol       Date:  2003-02       Impact factor: 5.948

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.