Literature DB >> 8962085

Ordered water molecules as key allosteric mediators in a cooperative dimeric hemoglobin.

W E Royer1, A Pardanani, Q H Gibson, E S Peterson, J M Friedman.   

Abstract

One of the most remarkable structural aspects of Scapharca dimeric hemoglobin is the disruption of a very well-ordered water cluster at the subunit interface upon ligand binding. We have explored the role of these crystallographically observed water molecules by site-directed mutagenesis and osmotic stress techniques. The isosteric mutation of Thr-72-->Val in the interface increases oxygen affinity more than 40-fold with a surprising enhancement of cooperativity. The only significant structural effect of this mutation is to destabilize two ordered water molecules in the deoxy interface. Wild-type Scapharca hemoglobin is strongly sensitive to osmotic conditions. Upon addition of glycerol, striking changes in Raman spectrum of the deoxy form are observed that indicate a transition toward the liganded form. Increased osmotic pressure, which lowers the oxygen affinity in human hemoglobin, raises the oxygen affinity of Scapharca hemoglobin regardless of whether the solute is glycerol, glucose, or sucrose. Analysis of these results provides an estimate of six water molecules lost upon oxygen binding to the dimer, in good agreement with eight predicted from crystal structures. These experiments suggest that the observed cluster of interfacial water molecules plays a crucial role in communication between subunits.

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Year:  1996        PMID: 8962085      PMCID: PMC26166          DOI: 10.1073/pnas.93.25.14526

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  26 in total

1.  ON THE NATURE OF ALLOSTERIC TRANSITIONS: A PLAUSIBLE MODEL.

Authors:  J MONOD; J WYMAN; J P CHANGEUX
Journal:  J Mol Biol       Date:  1965-05       Impact factor: 5.469

2.  Properties of the T state of human oxyhemoglobin studies by laser photolysis.

Authors:  C A Sawicki; Q H Gibson
Journal:  J Biol Chem       Date:  1977-11-10       Impact factor: 5.157

3.  The water effect on allosteric regulation of hemoglobin probed in water/glucose and water/glycine solutions.

Authors:  M F Colombo; G O Bonilla-Rodriguez
Journal:  J Biol Chem       Date:  1996-03-01       Impact factor: 5.157

4.  Hydrostatic and osmotic pressure as tools to study macromolecular recognition.

Authors:  C R Robinson; S G Sligar
Journal:  Methods Enzymol       Date:  1995       Impact factor: 1.600

5.  Bacterial expression of Scapharca dimeric hemoglobin: a simple model system for investigating protein cooperatively.

Authors:  C M Summerford; A Pardanani; A H Betts; A R Poteete; G Colotti; W E Royer
Journal:  Protein Eng       Date:  1995-06

6.  Macromolecules and water: probing with osmotic stress.

Authors:  V A Parsegian; R P Rand; D C Rau
Journal:  Methods Enzymol       Date:  1995       Impact factor: 1.600

7.  Kinetics of ligand binding and quaternary conformational change in the homodimeric hemoglobin from Scapharca inaequivalvis.

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Journal:  J Biol Chem       Date:  1984-06-10       Impact factor: 5.157

8.  Dimeric and tetrameric hemoglobins from the mollusc Scapharca inaequivalvis. Structural and functional properties.

Authors:  E Chiancone; P Vecchini; D Verzili; F Ascoli; E Antonini
Journal:  J Mol Biol       Date:  1981-11-05       Impact factor: 5.469

9.  Heme-heme interactions in a homodimeric cooperative hemoglobin. Evidence from transient Raman scattering.

Authors:  D L Rousseau; S Song; J M Friedman; A Boffi; E Chiancone
Journal:  J Biol Chem       Date:  1993-03-15       Impact factor: 5.157

10.  A single mutation (Thr72-->Ile) at the subunit interface is crucial for the functional properties of the homodimeric co-operative haemoglobin from Scapharca inaequivalvis.

Authors:  A Gambacurta; M C Piro; M Coletta; M E Clementi; F Polizio; A Desideri; R Santucci; F Ascoli
Journal:  J Mol Biol       Date:  1995-05-19       Impact factor: 5.469

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  42 in total

1.  Kinetic stability as a mechanism for protease longevity.

Authors:  E L Cunningham; S S Jaswal; J L Sohl; D A Agard
Journal:  Proc Natl Acad Sci U S A       Date:  1999-09-28       Impact factor: 11.205

2.  A cooperative oxygen-binding hemoglobin from Mycobacterium tuberculosis.

Authors:  M Couture; S R Yeh; B A Wittenberg; J B Wittenberg; Y Ouellet; D L Rousseau; M Guertin
Journal:  Proc Natl Acad Sci U S A       Date:  1999-09-28       Impact factor: 11.205

3.  Osmotic stress, crowding, preferential hydration, and binding: A comparison of perspectives.

Authors:  V A Parsegian; R P Rand; D C Rau
Journal:  Proc Natl Acad Sci U S A       Date:  2000-04-11       Impact factor: 11.205

4.  The role of hydration on the mechanism of allosteric regulation: in situ measurements of the oxygen-linked kinetics of water binding to hemoglobin.

Authors:  Andrés G Salvay; J Raúl Grigera; Marcio F Colombo
Journal:  Biophys J       Date:  2003-01       Impact factor: 4.033

5.  Cooperative macromolecular device revealed by meta-analysis of static and time-resolved structures.

Authors:  Zhong Ren; Vukica Srajer; James E Knapp; William E Royer
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-14       Impact factor: 11.205

6.  An optical signal correlated with the allosteric transition in Scapharca inaequivalvis HbI.

Authors:  Jeffry C Nichols; William E Royer; Quentin H Gibson
Journal:  Biochemistry       Date:  2006-12-19       Impact factor: 3.162

7.  Analysis of protein hydration in ultrahigh-resolution structures of the SRP GTPase Ffh.

Authors:  Ursula D Ramirez; Douglas M Freymann
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2006-11-23

8.  Allosteric action in real time: time-resolved crystallographic studies of a cooperative dimeric hemoglobin.

Authors:  James E Knapp; Reinhard Pahl; Vukica Srajer; William E Royer
Journal:  Proc Natl Acad Sci U S A       Date:  2006-05-09       Impact factor: 11.205

9.  Tertiary and quaternary allostery in tetrameric hemoglobin from Scapharca inaequivalvis.

Authors:  Luca Ronda; Stefano Bettati; Eric R Henry; Tara Kashav; Jeffrey M Sanders; William E Royer; Andrea Mozzarelli
Journal:  Biochemistry       Date:  2013-03-15       Impact factor: 3.162

10.  Osmolyte-induced perturbations of hydrogen bonding between hydration layer waters: correlation with protein conformational changes.

Authors:  Feng Guo; Joel M Friedman
Journal:  J Phys Chem B       Date:  2009-12-31       Impact factor: 2.991

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