Literature DB >> 17176097

An optical signal correlated with the allosteric transition in Scapharca inaequivalvis HbI.

Jeffry C Nichols1, William E Royer, Quentin H Gibson.   

Abstract

The transient absorbance change within the first 2 mus of photolysis of COHbI (from Scapharca inaequivalvis) reported by Chiancone et al. [Chiancone, E., Elber, R., Royer, W. E., Regan, R., and Gibson, Q. H. (1993) J. Biol. Chem. 268, 5711-5718] has been studied in several mutants. Evidence is presented that this change (rts) is associated with the allosteric transition between R and T states. Two different rts spectra relate to Hb2 and Hb2CO. No rts has been observed for mutants at position 97 (normally Phe). Correlation of ligand binding and rts shows that protein function changes at or near the rates of rts, typically, 2 x 10(6) s-1 (Hb2) and 5 x 10(5) s-1 (Hb2CO). Unique values of allosteric parameters for several mutants have been obtained by combining kinetic and equilibrium data. The effect of mutation on function thus may be assigned to allostery or to a change in intrinsic heme reactivity.

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Year:  2006        PMID: 17176097      PMCID: PMC2538617          DOI: 10.1021/bi061451k

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  14 in total

1.  Allosteric action in real time: time-resolved crystallographic studies of a cooperative dimeric hemoglobin.

Authors:  James E Knapp; Reinhard Pahl; Vukica Srajer; William E Royer
Journal:  Proc Natl Acad Sci U S A       Date:  2006-05-09       Impact factor: 11.205

Review 2.  Can a two-state MWC allosteric model explain hemoglobin kinetics?

Authors:  E R Henry; C M Jones; J Hofrichter; W A Eaton
Journal:  Biochemistry       Date:  1997-05-27       Impact factor: 3.162

3.  Ordered water molecules as key allosteric mediators in a cooperative dimeric hemoglobin.

Authors:  W E Royer; A Pardanani; Q H Gibson; E S Peterson; J M Friedman
Journal:  Proc Natl Acad Sci U S A       Date:  1996-12-10       Impact factor: 11.205

4.  Extensions of the allosteric model for haemoglobin.

Authors:  S J Edelstein
Journal:  Nature       Date:  1971-03-26       Impact factor: 49.962

5.  Mutation of residue Phe97 to Leu disrupts the central allosteric pathway in Scapharca dimeric hemoglobin.

Authors:  A Pardanani; Q H Gibson; G Colotti; W E Royer
Journal:  J Biol Chem       Date:  1997-05-16       Impact factor: 5.157

6.  Ligand binding and conformation change in the dimeric hemoglobin of the clam Scapharca inaequivalvis.

Authors:  E Chiancone; R Elber; W E Royer; R Regan; Q H Gibson
Journal:  J Biol Chem       Date:  1993-03-15       Impact factor: 5.157

7.  High-resolution crystallographic analysis of a co-operative dimeric hemoglobin.

Authors:  W E Royer
Journal:  J Mol Biol       Date:  1994-01-14       Impact factor: 5.469

8.  Kinetics of ligand binding and quaternary conformational change in the homodimeric hemoglobin from Scapharca inaequivalvis.

Authors:  E Antonini; F Ascoli; M Brunori; E Chiancone; D Verzili; R J Morris; Q H Gibson
Journal:  J Biol Chem       Date:  1984-06-10       Impact factor: 5.157

9.  Heme-heme interactions in a homodimeric cooperative hemoglobin. Evidence from transient Raman scattering.

Authors:  D L Rousseau; S Song; J M Friedman; A Boffi; E Chiancone
Journal:  J Biol Chem       Date:  1993-03-15       Impact factor: 5.157

10.  Crystal structure of oxygenated Scapharca dimeric hemoglobin at 1.7-A resolution.

Authors:  P J Condon; W E Royer
Journal:  J Biol Chem       Date:  1994-10-14       Impact factor: 5.157

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  7 in total

1.  A milestoning study of the kinetics of an allosteric transition: atomically detailed simulations of deoxy Scapharca hemoglobin.

Authors:  Ron Elber
Journal:  Biophys J       Date:  2007-02-26       Impact factor: 4.033

2.  Ligand migration and binding in the dimeric hemoglobin of Scapharca inaequivalvis.

Authors:  Karin Nienhaus; James E Knapp; Pasquale Palladino; William E Royer; G Ulrich Nienhaus
Journal:  Biochemistry       Date:  2007-11-15       Impact factor: 3.162

3.  Effect of Occluded Ligand Migration on the Kinetics and Structural Dynamics of Homodimeric Hemoglobin.

Authors:  Hanui Kim; Jong Goo Kim; Srinivasan Muniyappan; Tae Wu Kim; Sang Jin Lee; Hyotcherl Ihee
Journal:  J Phys Chem B       Date:  2020-02-19       Impact factor: 2.991

4.  Direct observation of cooperative protein structural dynamics of homodimeric hemoglobin from 100 ps to 10 ms with pump-probe X-ray solution scattering.

Authors:  Kyung Hwan Kim; Srinivasan Muniyappan; Key Young Oang; Jong Goo Kim; Shunsuke Nozawa; Tokushi Sato; Shin-ya Koshihara; Robert Henning; Irina Kosheleva; Hosung Ki; Youngmin Kim; Tae Wu Kim; Jeongho Kim; Shin-ichi Adachi; Hyotcherl Ihee
Journal:  J Am Chem Soc       Date:  2012-04-12       Impact factor: 15.419

5.  Insight into the allosteric mechanism of Scapharca dimeric hemoglobin.

Authors:  Jennifer M Laine; Miguel Amat; Brittany R Morgan; William E Royer; Francesca Massi
Journal:  Biochemistry       Date:  2014-11-14       Impact factor: 3.162

6.  Cooperative protein structural dynamics of homodimeric hemoglobin linked to water cluster at subunit interface revealed by time-resolved X-ray solution scattering.

Authors:  Jong Goo Kim; Srinivasan Muniyappan; Key Young Oang; Tae Wu Kim; Cheolhee Yang; Kyung Hwan Kim; Jeongho Kim; Hyotcherl Ihee
Journal:  Struct Dyn       Date:  2016-04-14       Impact factor: 2.920

Review 7.  Protein Structural Dynamics of Wild-Type and Mutant Homodimeric Hemoglobin Studied by Time-Resolved X-Ray Solution Scattering.

Authors:  Cheolhee Yang; Minseo Choi; Jong Goo Kim; Hanui Kim; Srinivasan Muniyappan; Shunsuke Nozawa; Shin-Ichi Adachi; Robert Henning; Irina Kosheleva; Hyotcherl Ihee
Journal:  Int J Mol Sci       Date:  2018-11-18       Impact factor: 5.923

  7 in total

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