Literature DB >> 8919814

Homology between genes for aromatic hydrocarbon degradation in surface and deep-subsurface Sphingomonas strains.

E Kim1, P J Aversano, M F Romine, R P Schneider, G J Zylstra.   

Abstract

The cloned genes for aromatic hydrocarbon degradation from Sphingomonas yanoikuyae B1 were utilized in Southern hybridization experiments with Sphingomonas strains from the surface and deep-subsurface environments. One hybridization pattern was obtained with BamHI-digested genomic DNAs for two surface strains, while a differing pattern was seen for five deep-subsurface strains. The cross-hybridizing genes were located in the chromosomes of the surface strains and on plasmids in the deep-subsurface strains.

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Year:  1996        PMID： 8919814      PMCID： PMC167919          DOI： 10.1128/aem.62.4.1467-1470.1996

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  16 in total

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Authors:  A E Kuhm; A Stolz; H J Knackmuss
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2.  Physiological diversity and distributions of heterotrophic bacteria in deep cretaceous sediments of the atlantic coastal plain.

Authors:  J K Fredrickson; D L Balkwill; J M Zachara; S M Li; F J Brockman; M A Simmons
Journal:  Appl Environ Microbiol       Date:  1991-02       Impact factor: 4.792

3.  Isolation and characterization of a subsurface bacterium capable of growth on toluene, naphthalene, and other aromatic compounds.

Authors:  J K Fredrickson; F J Brockman; D J Workman; S W Li; T O Stevens
Journal:  Appl Environ Microbiol       Date:  1991-03       Impact factor: 4.792

4.  Plasmid involvement in the degradation of polycyclic aromatic hydrocarbons by a Beijerinckia species.

Authors:  H Kiyohara; M Sugiyama; F J Mondello; D T Gibson; K Yano
Journal:  Biochem Biophys Res Commun       Date:  1983-03-29       Impact factor: 3.575

Review 5.  Molecular genetics and evolutionary relationship of PCB-degrading bacteria.

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Journal:  Biodegradation       Date:  1994-12       Impact factor: 3.909

6.  Molecular and biochemical characterization of two meta-cleavage dioxygenases involved in biphenyl and m-xylene degradation by Beijerinckia sp. strain B1.

Authors:  E Kim; G J Zylstra
Journal:  J Bacteriol       Date:  1995-06       Impact factor: 3.490

7.  Molecular cloning of novel genes for polycyclic aromatic hydrocarbon degradation from Comamonas testosteroni GZ39.

Authors:  A K Goyal; G J Zylstra
Journal:  Appl Environ Microbiol       Date:  1996-01       Impact factor: 4.792

Review 8.  Genetics of naphthalene catabolism in pseudomonads.

Authors:  K M Yen; C M Serdar
Journal:  Crit Rev Microbiol       Date:  1988       Impact factor: 7.624

9.  Studies of nucleotide sequence homology between naphthalene-utilizing strains of bacteria.

Authors:  C M Serdar; D T Gibson
Journal:  Biochem Biophys Res Commun       Date:  1989-10-31       Impact factor: 3.575

10.  Physical mapping and characterization of a catabolic plasmid from the deep-subsurface bacterium Sphingomonas sp. strain F199.

Authors:  L C Stillwell; S J Thurston; R P Schneider; M F Romine; J K Fredrickson; J D Saffer
Journal:  J Bacteriol       Date:  1995-08       Impact factor: 3.490
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  14 in total

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2.  Genome sequence of Sphingomonas sp. strain PAMC 26605, isolated from Arctic lichen (Ochrolechia sp.).

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3.  Complete sequence of a 184-kilobase catabolic plasmid from Sphingomonas aromaticivorans F199.

Authors:  M F Romine; L C Stillwell; K K Wong; S J Thurston; E C Sisk; C Sensen; T Gaasterland; J K Fredrickson; J D Saffer
Journal:  J Bacteriol       Date:  1999-03       Impact factor: 3.490

4.  Glutathione S-transferase-encoding gene as a potential probe for environmental bacterial isolates capable of degrading polycyclic aromatic hydrocarbons.

Authors:  G Lloyd-Jones; P C Lau
Journal:  Appl Environ Microbiol       Date:  1997-08       Impact factor: 4.792

5.  Novel organization of catechol meta pathway genes in the nitrobenzene degrader Comamonas sp. JS765 and its evolutionary implication.

Authors:  Zhongqi He; Rebecca E Parales; Jim C Spain; Glenn R Johnson
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6.  Draft genome sequence of a Sphingomonas sp., an endosymbiotic bacterium isolated from an arctic lichen Umbilicaria sp.

Authors:  Jungeun Lee; Seung Chul Shin; Su Jin Kim; Bum-Keun Kim; Soon Gyu Hong; Eun Hye Kim; Hyun Park; Hyoungseok Lee
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7.  Natural horizontal transfer of a naphthalene dioxygenase gene between bacteria native to a coal tar-contaminated field site.

Authors:  J B Herrick; K G Stuart-Keil; W C Ghiorse; E L Madsen
Journal:  Appl Environ Microbiol       Date:  1997-06       Impact factor: 4.792

8.  Carboxylation as an initial reaction in the anaerobic metabolism of naphthalene and phenanthrene by sulfidogenic consortia.

Authors:  X Zhang; L Y Young
Journal:  Appl Environ Microbiol       Date:  1997-12       Impact factor: 4.792

9.  Molecular evidence for the evolution of metal homeostasis genes by lateral gene transfer in bacteria from the deep terrestrial subsurface.

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Journal:  Appl Environ Microbiol       Date:  2004-03       Impact factor: 4.792

10.  Detection and characterization of conjugative degradative plasmids in xenobiotic-degrading Sphingomonas strains.

Authors:  Tamara Basta; Andreas Keck; Joachim Klein; Andreas Stolz
Journal:  J Bacteriol       Date:  2004-06       Impact factor: 3.490
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