Literature DB >> 22374946

Genome sequence of Sphingomonas sp. strain PAMC 26605, isolated from Arctic lichen (Ochrolechia sp.).

Seung Chul Shin1, Do Hwan Ahn, Jong Kyu Lee, Su Jin Kim, Soon Gyu Hong, Eun Hye Kim, Hyun Park.   

Abstract

The endosymbiotic bacterium Sphingomonas sp. strain PAMC 26605 was isolated from Arctic lichens (Ochrolechia sp.) on the Svalbard Islands. Here we report the draft genome sequence of this strain, which could provide further insights into the symbiotic mechanism of lichens in extreme environments.

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Year:  2012        PMID： 22374946      PMCID： PMC3294847          DOI： 10.1128/JB.00004-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  9 in total

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Authors:  A L Delcher; D Harmon; S Kasif; O White; S L Salzberg
Journal:  Nucleic Acids Res       Date:  1999-12-01       Impact factor: 16.971

2.  ABySS: a parallel assembler for short read sequence data.

Authors:  Jared T Simpson; Kim Wong; Shaun D Jackman; Jacqueline E Schein; Steven J M Jones; Inanç Birol
Journal:  Genome Res       Date:  2009-02-27       Impact factor: 9.043

3.  Characterization of Sphingomonas sp. Ant 17, an aromatic hydrocarbon-degrading bacterium isolated from Antarctic soil.

Authors:  C A Baraniecki; J Aislabie; J M Foght
Journal:  Microb Ecol       Date:  2002-01-23       Impact factor: 4.552

4.  Biodegradation of polycyclic aromatic hydrocarbons by Sphingomonas strains isolated from the terrestrial subsurface.

Authors:  T Shi; J K Fredrickson; D L Balkwill
Journal:  J Ind Microbiol Biotechnol       Date:  2001-05       Impact factor: 3.346

5.  Taxonomic study of aromatic-degrading bacteria from deep-terrestrial-subsurface sediments and description of Sphingomonas aromaticivorans sp. nov., Sphingomonas subterranea sp. nov., and Sphingomonas stygia sp. nov.

Authors:  D L Balkwill; G R Drake; R H Reeves; J K Fredrickson; D C White; D B Ringelberg; D P Chandler; M F Romine; D W Kennedy; C M Spadoni
Journal:  Int J Syst Bacteriol       Date:  1997-01

6.  The COG database: new developments in phylogenetic classification of proteins from complete genomes.

Authors:  R L Tatusov; D A Natale; I V Garkavtsev; T A Tatusova; U T Shankavaram; B S Rao; B Kiryutin; M Y Galperin; N D Fedorova; E V Koonin
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

7.  Homology between genes for aromatic hydrocarbon degradation in surface and deep-subsurface Sphingomonas strains.

Authors:  E Kim; P J Aversano; M F Romine; R P Schneider; G J Zylstra
Journal:  Appl Environ Microbiol       Date:  1996-04       Impact factor: 4.792

8.  Aromatic hydrocarbon degradation by Sphingomonas yanoikuyae B1.

Authors:  G J Zylstra; E Kim
Journal:  J Ind Microbiol Biotechnol       Date:  1997 Nov-Dec       Impact factor: 3.346

9.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
  9 in total
  3 in total

1.  Comparison of 26 sphingomonad genomes reveals diverse environmental adaptations and biodegradative capabilities.

Authors:  Frank O Aylward; Bradon R McDonald; Sandra M Adams; Alejandra Valenzuela; Rebeccah A Schmidt; Lynne A Goodwin; Tanja Woyke; Cameron R Currie; Garret Suen; Michael Poulsen
Journal:  Appl Environ Microbiol       Date:  2013-04-05       Impact factor: 4.792

2.  Simultaneous Presence of Bacteriochlorophyll and Xanthorhodopsin Genes in a Freshwater Bacterium.

Authors:  Karel Kopejtka; Jürgen Tomasch; Yonghui Zeng; Vadim Selyanin; Marko Dachev; Kasia Piwosz; Martin Tichý; David Bína; Zdenko Gardian; Boyke Bunk; Henner Brinkmann; Robert Geffers; Ruben Sommaruga; Michal Koblížek
Journal:  mSystems       Date:  2020-12-22       Impact factor: 6.496

3.  Crystal Structure of a Putative Cytochrome P450 Alkane Hydroxylase (CYP153D17) from Sphingomonas sp. PAMC 26605 and Its Conformational Substrate Binding.

Authors:  Chang Woo Lee; Sang-Cheol Yu; Joo-Ho Lee; Sun-Ha Park; Hyun Park; Tae-Jin Oh; Jun Hyuck Lee
Journal:  Int J Mol Sci       Date:  2016-12-09       Impact factor: 5.923
  3 in total

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