Literature DB >> 22582371

Draft genome sequence of a Sphingomonas sp., an endosymbiotic bacterium isolated from an arctic lichen Umbilicaria sp.

Jungeun Lee1, Seung Chul Shin, Su Jin Kim, Bum-Keun Kim, Soon Gyu Hong, Eun Hye Kim, Hyun Park, Hyoungseok Lee.   

Abstract

Sphingomonas sp. strain PAMC 26617 has been isolated from an Arctic lichen Umbilicaria sp. on the Svalbard Islands. Here we present the draft genome sequence of this strain, which represents a valuable resource for understanding the symbiotic mechanisms between endosymbiotic bacteria and lichens surviving in extreme environments.

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Year:  2012        PMID： 22582371      PMCID： PMC3370618          DOI： 10.1128/JB.00360-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  11 in total

1.  Improved microbial gene identification with GLIMMER.

Authors:  A L Delcher; D Harmon; S Kasif; O White; S L Salzberg
Journal:  Nucleic Acids Res       Date:  1999-12-01       Impact factor: 16.971

2.  ABySS: a parallel assembler for short read sequence data.

Authors:  Jared T Simpson; Kim Wong; Shaun D Jackman; Jacqueline E Schein; Steven J M Jones; Inanç Birol
Journal:  Genome Res       Date:  2009-02-27       Impact factor: 9.043

3.  Proposals of Sphingomonas paucimobilis gen. nov. and comb. nov., Sphingomonas parapaucimobilis sp. nov., Sphingomonas yanoikuyae sp. nov., Sphingomonas adhaesiva sp. nov., Sphingomonas capsulata comb. nov., and two genospecies of the genus Sphingomonas.

Authors:  E Yabuuchi; I Yano; H Oyaizu; Y Hashimoto; T Ezaki; H Yamamoto
Journal:  Microbiol Immunol       Date:  1990       Impact factor: 1.955

4.  Characterization of Sphingomonas sp. Ant 17, an aromatic hydrocarbon-degrading bacterium isolated from Antarctic soil.

Authors:  C A Baraniecki; J Aislabie; J M Foght
Journal:  Microb Ecol       Date:  2002-01-23       Impact factor: 4.552

5.  Proposal of the genus Sphingomonas sensu stricto and three new genera, Sphingobium, Novosphingobium and Sphingopyxis, on the basis of phylogenetic and chemotaxonomic analyses.

Authors:  M Takeuchi; K Hamana; A Hiraishi
Journal:  Int J Syst Evol Microbiol       Date:  2001-07       Impact factor: 2.747

6.  Taxonomic study of aromatic-degrading bacteria from deep-terrestrial-subsurface sediments and description of Sphingomonas aromaticivorans sp. nov., Sphingomonas subterranea sp. nov., and Sphingomonas stygia sp. nov.

Authors:  D L Balkwill; G R Drake; R H Reeves; J K Fredrickson; D C White; D B Ringelberg; D P Chandler; M F Romine; D W Kennedy; C M Spadoni
Journal:  Int J Syst Bacteriol       Date:  1997-01

7.  The COG database: new developments in phylogenetic classification of proteins from complete genomes.

Authors:  R L Tatusov; D A Natale; I V Garkavtsev; T A Tatusova; U T Shankavaram; B S Rao; B Kiryutin; M Y Galperin; N D Fedorova; E V Koonin
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

8.  Homology between genes for aromatic hydrocarbon degradation in surface and deep-subsurface Sphingomonas strains.

Authors:  E Kim; P J Aversano; M F Romine; R P Schneider; G J Zylstra
Journal:  Appl Environ Microbiol       Date:  1996-04       Impact factor: 4.792

9.  Aromatic hydrocarbon degradation by Sphingomonas yanoikuyae B1.

Authors:  G J Zylstra; E Kim
Journal:  J Ind Microbiol Biotechnol       Date:  1997 Nov-Dec       Impact factor: 3.346

10.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
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  4 in total

1.  Comparison of 26 sphingomonad genomes reveals diverse environmental adaptations and biodegradative capabilities.

Authors:  Frank O Aylward; Bradon R McDonald; Sandra M Adams; Alejandra Valenzuela; Rebeccah A Schmidt; Lynne A Goodwin; Tanja Woyke; Cameron R Currie; Garret Suen; Michael Poulsen
Journal:  Appl Environ Microbiol       Date:  2013-04-05       Impact factor: 4.792

2.  Reduced Diversity in the Bacteriome of the Phytophagous Mite Brevipalpus yothersi (Acari: Tenuipalpidae).

Authors:  Oscar E Ospina; Steven E Massey; Jose Carlos Verle Rodrigues
Journal:  Insects       Date:  2016-12-20       Impact factor: 2.769

Review 3.  3D biofilms: in search of the polysaccharides holding together lichen symbioses.

Authors:  Toby Spribille; Gulnara Tagirdzhanova; Spencer Goyette; Veera Tuovinen; Rebecca Case; Wesley F Zandberg
Journal:  FEMS Microbiol Lett       Date:  2020-03-01       Impact factor: 2.742

4.  Simultaneous Presence of Bacteriochlorophyll and Xanthorhodopsin Genes in a Freshwater Bacterium.

Authors:  Karel Kopejtka; Jürgen Tomasch; Yonghui Zeng; Vadim Selyanin; Marko Dachev; Kasia Piwosz; Martin Tichý; David Bína; Zdenko Gardian; Boyke Bunk; Henner Brinkmann; Robert Geffers; Ruben Sommaruga; Michal Koblížek
Journal:  mSystems       Date:  2020-12-22       Impact factor: 6.496
  4 in total

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