Literature DB >> 7635838

Physical mapping and characterization of a catabolic plasmid from the deep-subsurface bacterium Sphingomonas sp. strain F199.

L C Stillwell1, S J Thurston, R P Schneider, M F Romine, J K Fredrickson, J D Saffer.   

Abstract

A supercoiled 180-kb plasmid, pNL1, has been isolated from the deep-subsurface, chemoheterotrophic Sphingomonas sp. strain F199, and a physical map was generated. Analysis of a pNL1-derived cosmid library indicated that catechol 2,3-dioxygenase activity was linked to two distinct regions of the plasmid. Thus, the genes for aromatic catabolism in this Sphingomonas strain are, at least in part, plasmid encoded.

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Year:  1995        PMID： 7635838      PMCID： PMC177210          DOI： 10.1128/jb.177.15.4537-4539.1995

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  22 in total

Review 1.  The TOL (pWW0) catabolic plasmid.

Authors:  R S Burlage; S W Hooper; G S Sayler
Journal:  Appl Environ Microbiol       Date:  1989-06       Impact factor: 4.792

2.  Isolation and characterization of a subsurface bacterium capable of growth on toluene, naphthalene, and other aromatic compounds.

Authors:  J K Fredrickson; F J Brockman; D J Workman; S W Li; T O Stevens
Journal:  Appl Environ Microbiol       Date:  1991-03       Impact factor: 4.792

3.  Naturally occurring TOL plasmids in Pseudomonas strains carry either two homologous or two nonhomologous catechol 2,3-oxygenase genes.

Authors:  L K Chatfield; P A Williams
Journal:  J Bacteriol       Date:  1986-11       Impact factor: 3.490

4.  Physical properties and gel electrophoresis behavior of R12-derived plasmid DNAs.

Authors:  S Mickel; V Arena; W Bauer
Journal:  Nucleic Acids Res       Date:  1977       Impact factor: 16.971

5.  Rapid methods for the study of both stable and unstable plasmids in Pseudomonas.

Authors:  R Wheatcroft; P A Williams
Journal:  J Gen Microbiol       Date:  1981-06

6.  Cloning and nucleotide sequence of the 2,3-dihydroxybiphenyl dioxygenase gene from the PCB-degrading strain of Pseudomonas paucimobilis Q1.

Authors:  K Taira; N Hayase; N Arimura; S Yamashita; T Miyazaki; K Furukawa
Journal:  Biochemistry       Date:  1988-05-31       Impact factor: 3.162

7.  Involvement of a large plasmid in the degradation of 1,2-dichloroethane by Xanthobacter autotrophicus.

Authors:  G Tardif; C W Greer; D Labbé; P C Lau
Journal:  Appl Environ Microbiol       Date:  1991-06       Impact factor: 4.792

8.  Transposition of plasmid DNA segments specifying hydrocarbon degradation and their expression in various microorganisms.

Authors:  A M Chakrabarty; D A Friello; L H Bopp
Journal:  Proc Natl Acad Sci U S A       Date:  1978-07       Impact factor: 11.205

9.  Biodegradation of diphenyl ether and its monohalogenated derivatives by Sphingomonas sp. strain SS3.

Authors:  S Schmidt; R M Wittich; D Erdmann; H Wilkes; W Francke; P Fortnagel
Journal:  Appl Environ Microbiol       Date:  1992-09       Impact factor: 4.792

10.  Cloning and sequencing of the gene for a Pseudomonas paucimobilis enzyme that cleaves beta-aryl ether.

Authors:  E Masai; Y Katayama; S Kawai; S Nishikawa; M Yamasaki; N Morohoshi
Journal:  J Bacteriol       Date:  1991-12       Impact factor: 3.490
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  5 in total

1.  Complete sequence of a 184-kilobase catabolic plasmid from Sphingomonas aromaticivorans F199.

Authors:  M F Romine; L C Stillwell; K K Wong; S J Thurston; E C Sisk; C Sensen; T Gaasterland; J K Fredrickson; J D Saffer
Journal:  J Bacteriol       Date:  1999-03       Impact factor: 3.490

2.  The Sphingomonas plasmid pCAR3 is involved in complete mineralization of carbazole.

Authors:  Masaki Shintani; Masaaki Urata; Kengo Inoue; Kaori Eto; Hiroshi Habe; Toshio Omori; Hisakazu Yamane; Hideaki Nojiri
Journal:  J Bacteriol       Date:  2006-12-15       Impact factor: 3.490

3.  Use of tagged random hexamer amplification (TRHA) to clone and sequence minute quantities of DNA--application to a 180 kb plasmid isolated from Sphingomonas F199.

Authors:  K K Wong; L C Stillwell; C A Dockery; J D Saffer
Journal:  Nucleic Acids Res       Date:  1996-10-01       Impact factor: 16.971

4.  Homology between genes for aromatic hydrocarbon degradation in surface and deep-subsurface Sphingomonas strains.

Authors:  E Kim; P J Aversano; M F Romine; R P Schneider; G J Zylstra
Journal:  Appl Environ Microbiol       Date:  1996-04       Impact factor: 4.792

Review 5.  Genomics of microbial plasmids: classification and identification based on replication and transfer systems and host taxonomy.

Authors:  Masaki Shintani; Zoe K Sanchez; Kazuhide Kimbara
Journal:  Front Microbiol       Date:  2015-03-31       Impact factor: 5.640
  5 in total

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