Literature DB >> 8823173

Structure-reactivity relationships for beta-galactosidase (Escherichia coli, lac Z). 3. Evidence that Glu-461 participates in Brønsted acid-base catalysis of beta-D-galactopyranosyl group transfer.

J P Richard1, R E Huber, S Lin, C Heo, T L Amyes.   

Abstract

Experiments are reported to determine the role of Glu-461 in the beta-D-galactopyranosyl group transfer reaction catalyzed by beta-galactosidase. E461G beta-galactosidase catalyzes the hydrolysis of 4-nitrophenyl beta-D-galactopyranoside through a galactosyl-enzyme intermediate that shows a high reactivity toward the anionic nucleophile azide ion, but no detectable reactivity toward the neutral nucleophile trifluoroethanol. By contrast, the galactosylated wild type enzyme is reactive toward trifluoroethanol but not anions. The change in specificity observed for the E461G mutant can be rationalized by a mechanism in which Glu-461 participates in general acid-base catalysis at the leaving group/nucleophile. The observed low activity of E461G beta-galactosidase for hydrolysis of 2,2,2-trifluoroethyl beta-D-galactopyranoside is due entirely to a wild type enzyme contaminant in our preparation of the mutant enzyme, and the mutant enzyme itself has essentially no catalytic activity for cleavage of this substrate. The substitution of glutamate at position 461 by glycine leads to a more than 500 000-fold reduction in the rate constant for enzymatic cleavage of the glycosidic bond to the strongly basic trifluoroethoxide leaving group (pKa = 12.4), but to a smaller 1300-fold reduction in the rate constant for cleavage of the bond to the more weakly basic 4-nitrophenoxide leaving group (pKa = 7.1). This corresponds to a more than 3.5 kcal/mol greater stabilization by Glu-461 of the transition state for the reaction of the substrate with the more basic trifluoroethoxide leaving group. These data are consistent with the conclusion that Glu-461 provides general acid catalysis of leaving group departure, which is most effective for cleavage of the relatively strong bonds to basic alkoxide leaving groups.

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Year:  1996        PMID: 8823173     DOI: 10.1021/bi961028j

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  12 in total

1.  High resolution refinement of beta-galactosidase in a new crystal form reveals multiple metal-binding sites and provides a structural basis for alpha-complementation.

Authors:  D H Juers; R H Jacobson; D Wigley; X J Zhang; R E Huber; D E Tronrud; B W Matthews
Journal:  Protein Sci       Date:  2000-09       Impact factor: 6.725

2.  Direct and indirect roles of His-418 in metal binding and in the activity of beta-galactosidase (E. coli).

Authors:  Douglas H Juers; Beatrice Rob; Megan L Dugdale; Nastaron Rahimzadeh; Clarence Giang; Michelle Lee; Brian W Matthews; Reuben E Huber
Journal:  Protein Sci       Date:  2009-06       Impact factor: 6.725

3.  The use of reaction timecourses to determine the level of minor contaminants in enzyme preparations.

Authors:  Lawrence M Goldman; Tina L Amyes
Journal:  Anal Biochem       Date:  2014-01-03       Impact factor: 3.365

4.  Structural explanation for allolactose (lac operon inducer) synthesis by lacZ β-galactosidase and the evolutionary relationship between allolactose synthesis and the lac repressor.

Authors:  Robert W Wheatley; Summie Lo; Larisa J Jancewicz; Megan L Dugdale; Reuben E Huber
Journal:  J Biol Chem       Date:  2013-03-13       Impact factor: 5.157

5.  Studies of Glu-416 variants of beta-galactosidase (E. coli) show that the active site Mg(2+) is not important for structure and indicate that the main role of Mg (2+) is to mediate optimization of active site chemistry.

Authors:  Summie Lo; Megan L Dugdale; Nisha Jeerh; Tabitha Ku; Nathan J Roth; Reuben E Huber
Journal:  Protein J       Date:  2010-01       Impact factor: 2.371

6.  Structure-Reactivity Relationships for β-Galactosidase (Escherichia coli, lac Z): A Second Derivative Effect on β(nuc) for Addition of Alkyl Alcohols to an Oxocarbenium Ion Reaction Intermediate.

Authors:  John P Richard; Christina K Heo; Maria M Toteva
Journal:  J Phys Org Chem       Date:  2008-07-01       Impact factor: 2.391

7.  Kinetic isotope effects for alkaline phosphatase reactions: implications for the role of active-site metal ions in catalysis.

Authors:  Jesse G Zalatan; Irina Catrina; Rebecca Mitchell; Piotr K Grzyska; Patrick J O'brien; Daniel Herschlag; Alvan C Hengge
Journal:  J Am Chem Soc       Date:  2007-07-14       Impact factor: 15.419

Review 8.  Enzyme architecture: on the importance of being in a protein cage.

Authors:  John P Richard; Tina L Amyes; Bogdana Goryanova; Xiang Zhai
Journal:  Curr Opin Chem Biol       Date:  2014-03-31       Impact factor: 8.822

9.  BgaA acts as an adhesin to mediate attachment of some pneumococcal strains to human epithelial cells.

Authors:  Dominique H Limoli; Julie A Sladek; Lindsey A Fuller; Anirudh K Singh; Samantha J King
Journal:  Microbiology (Reading)       Date:  2011-05-20       Impact factor: 2.777

10.  Purification, gene cloning, and biochemical characterization of a β-glucosidase capable of hydrolyzing sesaminol triglucoside from Paenibacillus sp. KB0549.

Authors:  Arun Nair; Akika Kuwahara; Akihiro Nagase; Haruhiko Yamaguchi; Tatsuya Yamazaki; Miho Hosoya; Ayano Omura; Kunio Kiyomoto; Masa-Atsu Yamaguchi; Takefumi Shimoyama; Seiji Takahashi; Toru Nakayama
Journal:  PLoS One       Date:  2013-04-10       Impact factor: 3.240

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