Literature DB >> 19472413

Direct and indirect roles of His-418 in metal binding and in the activity of beta-galactosidase (E. coli).

Douglas H Juers1, Beatrice Rob, Megan L Dugdale, Nastaron Rahimzadeh, Clarence Giang, Michelle Lee, Brian W Matthews, Reuben E Huber.   

Abstract

The active site of ss-galactosidase (E. coli) contains a Mg(2+) ion ligated by Glu-416, His-418 and Glu-461 plus three water molecules. A Na(+) ion binds nearby. To better understand the role of the active site Mg(2+) and its ligands, His-418 was substituted with Asn, Glu and Phe. The Asn-418 and Glu-418 variants could be crystallized and the structures were shown to be very similar to native enzyme. The Glu-418 variant showed increased mobility of some residues in the active site, which explains why the substitutions at the Mg(2+) site also reduce Na(+) binding affinity. The Phe variant had reduced stability, bound Mg(2+) weakly and could not be crystallized. All three variants have low catalytic activity due to large decreases in the degalactosylation rate. Large decreases in substrate binding affinity were also observed but transition state analogs bound as well or better than to native. The results indicate that His-418, together with the Mg(2+), modulate the central role of Glu-461 in binding and as a general acid/base catalyst in the overall catalytic mechanism. Glucose binding as an acceptor was also dramatically decreased, indicating that His-418 is very important for the formation of allolactose (the natural inducer of the lac operon).

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Year:  2009        PMID: 19472413      PMCID: PMC2774438          DOI: 10.1002/pro.140

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  37 in total

1.  Site specific mutants of beta-galactosidase show that Tyr-503 is unimportant in Mg2+ binding but that Glu-461 is very important and may be a ligand to Mg2+.

Authors:  R A Edwards; C G Cupples; R E Huber
Journal:  Biochem Biophys Res Commun       Date:  1990-08-31       Impact factor: 3.575

Review 2.  The enhancement of enzymatic rate accelerations by Brønsted acid-base catalysis.

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Journal:  Biochemistry       Date:  1998-03-31       Impact factor: 3.162

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Journal:  Methods Enzymol       Date:  1987       Impact factor: 1.600

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6.  A structural view of the action of Escherichia coli (lacZ) beta-galactosidase.

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Journal:  Biochemistry       Date:  2001-12-11       Impact factor: 3.162

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Journal:  Biochem J       Date:  1978-11-01       Impact factor: 3.857

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Journal:  Biochemistry       Date:  1979-09-18       Impact factor: 3.162

9.  Trp-999 of beta-galactosidase (Escherichia coli) is a key residue for binding, catalysis, and synthesis of allolactose, the natural lac operon inducer.

Authors:  Reuben E Huber; Shamina Hakda; Calvino Cheng; Claire G Cupples; Robert A Edwards
Journal:  Biochemistry       Date:  2003-02-18       Impact factor: 3.162

10.  Determination of the roles of Glu-461 in beta-galactosidase (Escherichia coli) using site-specific mutagenesis.

Authors:  C G Cupples; J H Miller; R E Huber
Journal:  J Biol Chem       Date:  1990-04-05       Impact factor: 5.157

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  15 in total

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Review 3.  LacZ β-galactosidase: structure and function of an enzyme of historical and molecular biological importance.

Authors:  Douglas H Juers; Brian W Matthews; Reuben E Huber
Journal:  Protein Sci       Date:  2012-11-13       Impact factor: 6.725

4.  Structural explanation for allolactose (lac operon inducer) synthesis by lacZ β-galactosidase and the evolutionary relationship between allolactose synthesis and the lac repressor.

Authors:  Robert W Wheatley; Summie Lo; Larisa J Jancewicz; Megan L Dugdale; Reuben E Huber
Journal:  J Biol Chem       Date:  2013-03-13       Impact factor: 5.157

5.  Studies of Glu-416 variants of beta-galactosidase (E. coli) show that the active site Mg(2+) is not important for structure and indicate that the main role of Mg (2+) is to mediate optimization of active site chemistry.

Authors:  Summie Lo; Megan L Dugdale; Nisha Jeerh; Tabitha Ku; Nathan J Roth; Reuben E Huber
Journal:  Protein J       Date:  2010-01       Impact factor: 2.371

6.  Illuminating the binding interactions of galactonoamidines during the inhibition of β-galactosidase (E. coli).

Authors:  Qiu-Hua Fan; Jessica B Pickens; Susanne Striegler; Cédric D Gervaise
Journal:  Bioorg Med Chem       Date:  2015-12-18       Impact factor: 3.641

7.  Change of tRNA identity leads to a divergent orthogonal histidyl-tRNA synthetase/tRNAHis pair.

Authors:  Jing Yuan; Tasos Gogakos; Arianne M Babina; Dieter Söll; Lennart Randau
Journal:  Nucleic Acids Res       Date:  2010-11-17       Impact factor: 16.971

8.  Homodimeric β-galactosidase from Lactobacillus delbrueckii subsp. bulgaricus DSM 20081: expression in Lactobacillus plantarum and biochemical characterization.

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Journal:  J Agric Food Chem       Date:  2012-02-09       Impact factor: 5.279

9.  Biochemical characterization of mutants in the active site residues of the β-galactosidase enzyme of Bacillus circulans ATCC 31382.

Authors:  Jelle B Bultema; Bas J H Kuipers; Lubbert Dijkhuizen
Journal:  FEBS Open Bio       Date:  2014-11-12       Impact factor: 2.693

10.  From by-product to valuable components: Efficient enzymatic conversion of lactose in whey using β-galactosidase from Streptococcus thermophilus.

Authors:  Barbara Geiger; Hoang-Minh Nguyen; Stefanie Wenig; Hoang Anh Nguyen; Cindy Lorenz; Roman Kittl; Geir Mathiesen; Vincent G H Eijsink; Dietmar Haltrich; Thu-Ha Nguyen
Journal:  Biochem Eng J       Date:  2016-12-15       Impact factor: 3.978

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