Literature DB >> 19684875

Structure-Reactivity Relationships for β-Galactosidase (Escherichia coli, lac Z): A Second Derivative Effect on β(nuc) for Addition of Alkyl Alcohols to an Oxocarbenium Ion Reaction Intermediate.

John P Richard1, Christina K Heo, Maria M Toteva.   

Abstract

Velocities for the synthesis of trifluoroethyl 2-deoxy-β-D-galactopyranoside by transfer of the 2-deoxygalactosyl group from β-galactosidase to trifluoroethanol were determined from studies of the β-galactosidase-catalyzed cleavage of 4-nitrophenyl-2-deoxy-β-D-galactopyranoside as the difference in rates of appearance of 4-nitrophenoxide anion and 2-D-deoxygalactose. These data were used to calculate a rate constant ratio of k(ROH)/k(s) = 2.3 M(-1) for partitioning of the intermediate between addition of trifluoroethanol and solvent water. Velocities for the synthesis of other alkyl 2-deoxy-β-D-galactopyranosides by transfer of the 2-deoxygalactosyl group from β-galactosidase to alkyl alcohols were determined from the effect of alkyl alcohols on the velocity of β-galactosidase-catalyzed cleavage of 4-nitrophenyl-2-deoxy-β-D-galactopyranoside in a reaction where breakdown of the intermediate is rate determining. These data were used to calculate rate constant ratios k(ROH)/k(s) for the reactions of eight alkyl alcohols. Absolute rate constants k(ROH) (M(-1) s(-1)) were calculated from k(ROH)/k(s) and k(s) = 0.002 s(-1) for the addition of water. A Brønsted coefficient of β(nuc) = -0.07 ± 0.08 was determined as the slope of a logarithmic correlation of k(ROH) against alcohol pK(a). The change from a 2-OH to a 2-H substituent at the β-D-galactopyranosyl intermediate causes a 0.12 ± 0.04 increase in the value of β(nuc) for alcohol addition. This anti-Hammond effect provides evidence that general basecatalyzed addition of alcohols to an enzyme bound β-D-galactopyranosyl oxocarbenium ion intermediate proceeds along a reaction coordinate in which there is strong coupling between carbon-oxygen bond formation and proton transfer from the alcohol to a basic residue at the enzyme.

Entities:  

Year:  2008        PMID: 19684875      PMCID: PMC2726753          DOI: 10.1002/poc.1302

Source DB:  PubMed          Journal:  J Phys Org Chem        ISSN: 0894-3230            Impact factor:   2.391


  17 in total

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Authors:  J P Richard
Journal:  Biochemistry       Date:  1998-03-31       Impact factor: 3.162

2.  Impaired transition state complementarity in the hydrolysis of O-arylphosphorothioates by protein-tyrosine phosphatases.

Authors:  Y L Zhang; F Hollfelder; S J Gordon; L Chen; Y F Keng; L Wu; D Herschlag; Z Y Zhang
Journal:  Biochemistry       Date:  1999-09-14       Impact factor: 3.162

3.  Slow binding of D-galactal, a "reversible" inhibitor of bacterial beta-galactosidase.

Authors:  D F Wentworth; R Wolfenden
Journal:  Biochemistry       Date:  1974-11-05       Impact factor: 3.162

4.  Ground-state, transition-state, and metal-cation effects of the 2-hydroxyl group on beta-D-galactopyranosyl transfer catalyzed by beta-galactosidase (Escherichia coli, lac Z).

Authors:  John P Richard; Deborah A McCall; Christina K Heo; Maria M Toteva
Journal:  Biochemistry       Date:  2005-09-06       Impact factor: 3.162

Review 5.  Glycosyl fluorides in enzymatic reactions.

Authors:  S J Williams; S G Withers
Journal:  Carbohydr Res       Date:  2000-07-10       Impact factor: 2.104

6.  Structure-reactivity relationships for beta-galactosidase (Escherichia coli, lac Z). 2. Reactions of the galactosyl-enzyme intermediate with alcohols and azide ion.

Authors:  J P Richard; J G Westerfeld; S Lin; J Beard
Journal:  Biochemistry       Date:  1995-09-19       Impact factor: 3.162

7.  -galactosidase-catalysed hydrolysis of -D-galactopyranosyl azide.

Authors:  M L Sinnott
Journal:  Biochem J       Date:  1971-12       Impact factor: 3.857

8.  Do electrostatic interactions with positively charged active site groups tighten the transition state for enzymatic phosphoryl transfer?

Authors:  Ivana Nikolic-Hughes; Douglas C Rees; Daniel Herschlag
Journal:  J Am Chem Soc       Date:  2004-09-29       Impact factor: 15.419

9.  The effect of methanol and dioxan on the rates of the beta-galactosidase-catalysed hydrolyses of some beta-D-galactrophyranosides: rate-limiting degalactosylation. The ph-dependence of galactosylation and degalactosylation.

Authors:  M L Sinnott; O M Viratelle
Journal:  Biochem J       Date:  1973-05       Impact factor: 3.857

10.  The mechanism of action of beta-galactosidase. Effect of aglycone nature and -deuterium substitution on the hydrolysis of aryl galactosides.

Authors:  M L Sinnott; I J Souchard
Journal:  Biochem J       Date:  1973-05       Impact factor: 3.857

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  1 in total

Review 1.  Linear Free Energy Relationships for Enzymatic Reactions: Fresh Insight from a Venerable Probe.

Authors:  John P Richard; Judith R Cristobal; Tina L Amyes
Journal:  Acc Chem Res       Date:  2021-05-03       Impact factor: 22.384

  1 in total

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