Literature DB >> 17630738

Kinetic isotope effects for alkaline phosphatase reactions: implications for the role of active-site metal ions in catalysis.

Jesse G Zalatan1, Irina Catrina, Rebecca Mitchell, Piotr K Grzyska, Patrick J O'brien, Daniel Herschlag, Alvan C Hengge.   

Abstract

Enzyme-catalyzed phosphoryl transfer reactions have frequently been suggested to proceed through transition states that are altered from their solution counterparts, with the alterations presumably arising from interactions with active-site functional groups. In particular, the phosphate monoester hydrolysis reaction catalyzed by Escherichia coli alkaline phosphatase (AP) has been the subject of intensive scrutiny. Recent linear free energy relationship (LFER) studies suggest that AP catalyzes phosphate monoester hydrolysis through a loose transition state, similar to that in solution. To gain further insight into the nature of the transition state and active-site interactions, we have determined kinetic isotope effects (KIEs) for AP-catalyzed hydrolysis reactions with several phosphate monoester substrates. The LFER and KIE data together provide a consistent picture for the nature of the transition state for AP-catalyzed phosphate monoester hydrolysis and support previous models suggesting that the enzymatic transition state is similar to that in solution. Moreover, the KIE data provides unique information regarding specific interactions between the transition state and the active-site Zn2+ ions. These results provide strong support for a model in which electrostatic interactions between the bimetallo Zn2+ site and a nonbridging phosphate ester oxygen atom make a significant contribution to the large rate enhancement observed for AP-catalyzed phosphate monoester hydrolysis.

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Year:  2007        PMID: 17630738      PMCID: PMC3171187          DOI: 10.1021/ja072196+

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  50 in total

1.  The mechanism of the phosphoryl transfer catalyzed by Yersinia protein-tyrosine phosphatase: a computational and isotope effect study.

Authors:  P G Czyryca; A C Hengge
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Review 2.  Enzymatic mechanisms of phosphate and sulfate transfer.

Authors:  W Wallace Cleland; Alvan C Hengge
Journal:  Chem Rev       Date:  2006-08       Impact factor: 60.622

3.  Vibrational behavior of the phosphates ions in dittmarite-type compounds M'M''PO4.H2O (M'=K+, NH4+; M''=Mn2+, Co2+, Ni2+).

Authors:  Violeta G Koleva
Journal:  Spectrochim Acta A Mol Biomol Spectrosc       Date:  2006-07-14       Impact factor: 4.098

4.  Catalysis of the hydrolysis of phosphorylated pyridines by alkaline phosphatase has little or no dependence on the pKa of the leaving group.

Authors:  B I Labow; D Herschlag; W P Jencks
Journal:  Biochemistry       Date:  1993-08-31       Impact factor: 3.162

5.  Alkaline phosphatase is an almost perfect enzyme.

Authors:  T T Simopoulos; W P Jencks
Journal:  Biochemistry       Date:  1994-08-30       Impact factor: 3.162

6.  Reaction mechanism of alkaline phosphatase based on crystal structures. Two-metal ion catalysis.

Authors:  E E Kim; H W Wyckoff
Journal:  J Mol Biol       Date:  1991-03-20       Impact factor: 5.469

Review 7.  Structure and mechanism of alkaline phosphatase.

Authors:  J E Coleman
Journal:  Annu Rev Biophys Biomol Struct       Date:  1992

8.  IR and Raman study on the interactions of the 5'-GMP and 5'-CMP phosphate groups with Mg(II), Ca(II), Sr(II), Ba(II), Cr(III), Co(II), Cu(II), Zn(II), Cd(II), Al(III) and Ga(III).

Authors:  M de la Fuente; A Hernanz; R Navarro
Journal:  J Biol Inorg Chem       Date:  2004-09-25       Impact factor: 3.358

9.  Comparisons of phosphorothioate with phosphate transfer reactions for a monoester, diester, and triester: isotope effect studies.

Authors:  Irina E Catrina; Alvan C Hengge
Journal:  J Am Chem Soc       Date:  2003-06-25       Impact factor: 15.419

10.  Analysis of solvent nucleophile isotope effects: evidence for concerted mechanisms and nucleophilic activation by metal coordination in nonenzymatic and ribozyme-catalyzed phosphodiester hydrolysis.

Authors:  Adam G Cassano; Vernon E Anderson; Michael E Harris
Journal:  Biochemistry       Date:  2004-08-17       Impact factor: 3.162

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  24 in total

Review 1.  Biological phosphoryl-transfer reactions: understanding mechanism and catalysis.

Authors:  Jonathan K Lassila; Jesse G Zalatan; Daniel Herschlag
Journal:  Annu Rev Biochem       Date:  2011       Impact factor: 23.643

Review 2.  Kinetic isotope effects in the characterization of catalysis by protein tyrosine phosphatases.

Authors:  Alvan C Hengge
Journal:  Biochim Biophys Acta       Date:  2015-04-01

3.  Altered transition state for the reaction of an RNA model catalyzed by a dinuclear zinc(II) catalyst.

Authors:  Tim Humphry; Subashree Iyer; Olga Iranzo; Janet R Morrow; John P Richard; Piotr Paneth; Alvan C Hengge
Journal:  J Am Chem Soc       Date:  2008-12-31       Impact factor: 15.419

4.  Transition State Analysis of the Reaction Catalyzed by the Phosphotriesterase from Sphingobium sp. TCM1.

Authors:  Andrew N Bigley; Dao Feng Xiang; Tamari Narindoshvili; Charlie W Burgert; Alvan C Hengge; Frank M Raushel
Journal:  Biochemistry       Date:  2019-02-19       Impact factor: 3.162

5.  Structural and mechanistic insights into C-P bond hydrolysis by phosphonoacetate hydrolase.

Authors:  Vinayak Agarwal; Svetlana A Borisova; William W Metcalf; Wilfred A van der Donk; Satish K Nair
Journal:  Chem Biol       Date:  2011-10-28

Review 6.  Experimental analyses of the chemical dynamics of ribozyme catalysis.

Authors:  Michael E Harris; Adam G Cassano
Journal:  Curr Opin Chem Biol       Date:  2008-10-24       Impact factor: 8.822

7.  Comparative enzymology in the alkaline phosphatase superfamily to determine the catalytic role of an active-site metal ion.

Authors:  Jesse G Zalatan; Timothy D Fenn; Daniel Herschlag
Journal:  J Mol Biol       Date:  2008-10-02       Impact factor: 5.469

8.  Arginine coordination in enzymatic phosphoryl transfer: evaluation of the effect of Arg166 mutations in Escherichia coli alkaline phosphatase.

Authors:  Patrick J O'Brien; Jonathan Kyle Lassila; Timothy D Fenn; Jesse G Zalatan; Daniel Herschlag
Journal:  Biochemistry       Date:  2008-07-22       Impact factor: 3.162

9.  Leaving Group Ability Observably Affects Transition State Structure in a Single Enzyme Active Site.

Authors:  Daniel Roston; Darren Demapan; Qiang Cui
Journal:  J Am Chem Soc       Date:  2016-06-02       Impact factor: 15.419

10.  Experimental and computational analysis of the transition state for ribonuclease A-catalyzed RNA 2'-O-transphosphorylation.

Authors:  Hong Gu; Shuming Zhang; Kin-Yiu Wong; Brian K Radak; Thakshila Dissanayake; Daniel L Kellerman; Qing Dai; Masaru Miyagi; Vernon E Anderson; Darrin M York; Joseph A Piccirilli; Michael E Harris
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-22       Impact factor: 11.205

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