Literature DB >> 8785502

Leucine side-chain rotamers in a glycophorin A transmembrane peptide as revealed by three-bond carbon-carbon couplings and 13C chemical shifts.

K R MacKenzie1, J H Prestegard, D M Engelman.   

Abstract

We have used a spin-echo difference NMR pulse sequence to measure three-bond J couplings between lambda- and alpha-carbons of the leucine residues in a micelle-associated helical peptide dimer that corresponds to residues 62-101 of the transmembrane erythrocyte protein glycophorin A. The observed 3J couplings correlate strongly with the 13C chemical shift of the lambda-methyl groups, and within experimental error both the shift distribution of the methyl carbons and the variations in 3J can be accounted for by variations in side-chain rotamer populations. We infer that all leucine side chains in this peptide dimer are in fast exchange among chi 2 rotamers and sample two of the three possible rotameric states, even when the side chain forms part of the dimer interface. The observed correlation of chemical shift with couplings can be traced to a gamma-gauche interaction of methyl and alpha-carbons. This correlation may provide an alternate route to rotamer analysis in some protein systems.

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Year:  1996        PMID: 8785502     DOI: 10.1007/bf00202043

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  12 in total

1.  Sequence specificity in the dimerization of transmembrane alpha-helices.

Authors:  M A Lemmon; J M Flanagan; H R Treutlein; J Zhang; D M Engelman
Journal:  Biochemistry       Date:  1992-12-29       Impact factor: 3.162

Review 2.  Measurement of homo- and heteronuclear J couplings from quantitative J correlation.

Authors:  A Bax; G W Vuister; S Grzesiek; F Delaglio; A C Wang; R Tschudin; G Zhu
Journal:  Methods Enzymol       Date:  1994       Impact factor: 1.600

3.  Comparison of the backbone dynamics of a folded and an unfolded SH3 domain existing in equilibrium in aqueous buffer.

Authors:  N A Farrow; O Zhang; J D Forman-Kay; L E Kay
Journal:  Biochemistry       Date:  1995-01-24       Impact factor: 3.162

4.  Dynamics of methyl groups in proteins as studied by proton-detected 13C NMR spectroscopy. Application to the leucine residues of staphylococcal nuclease.

Authors:  L K Nicholson; L E Kay; D M Baldisseri; J Arango; P E Young; A Bax; D A Torchia
Journal:  Biochemistry       Date:  1992-06-16       Impact factor: 3.162

5.  A simple and sensitive experiment for measurement of JCC couplings between backbone carbonyl and methyl carbons in isotopically enriched proteins.

Authors:  S Grzesiek; G W Vuister; A Bax
Journal:  J Biomol NMR       Date:  1993-07       Impact factor: 2.835

6.  NMR determination of residual structure in a urea-denatured protein, the 434-repressor.

Authors:  D Neri; M Billeter; G Wider; K Wüthrich
Journal:  Science       Date:  1992-09-11       Impact factor: 47.728

7.  Calibration of the angular dependence of the amide proton-C alpha proton coupling constants, 3JHN alpha, in a globular protein. Use of 3JHN alpha for identification of helical secondary structure.

Authors:  A Pardi; M Billeter; K Wüthrich
Journal:  J Mol Biol       Date:  1984-12-15       Impact factor: 5.469

8.  Structural and dynamic characterization of the urea denatured state of the immunoglobulin binding domain of streptococcal protein G by multidimensional heteronuclear NMR spectroscopy.

Authors:  M K Frank; G M Clore; A M Gronenborn
Journal:  Protein Sci       Date:  1995-12       Impact factor: 6.725

9.  Structure and dynamics of a denatured 131-residue fragment of staphylococcal nuclease: a heteronuclear NMR study.

Authors:  A T Alexandrescu; C Abeygunawardana; D Shortle
Journal:  Biochemistry       Date:  1994-02-08       Impact factor: 3.162

10.  NMR analysis of the residual structure in the denatured state of an unusual mutant of staphylococcal nuclease.

Authors:  D Shortle; C Abeygunawardana
Journal:  Structure       Date:  1993-10-15       Impact factor: 5.006

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  13 in total

1.  A procedure for refining a coiled coil protein structure using x-ray fiber diffraction and modeling.

Authors:  Fatma Briki; Jean Doucet; Catherine Etchebest
Journal:  Biophys J       Date:  2002-10       Impact factor: 4.033

2.  Residue-specific side-chain packing determines the backbone dynamics of transmembrane model helices.

Authors:  Stefan Quint; Simon Widmaier; David Minde; Daniel Hornburg; Dieter Langosch; Christina Scharnagl
Journal:  Biophys J       Date:  2010-10-20       Impact factor: 4.033

3.  The structure of phospholamban pentamer reveals a channel-like architecture in membranes.

Authors:  Kirill Oxenoid; James J Chou
Journal:  Proc Natl Acad Sci U S A       Date:  2005-07-25       Impact factor: 11.205

Review 4.  Interaction and conformational dynamics of membrane-spanning protein helices.

Authors:  Dieter Langosch; Isaiah T Arkin
Journal:  Protein Sci       Date:  2009-07       Impact factor: 6.725

5.  NMR structural inference of symmetric homo-oligomers.

Authors:  Himanshu Chandola; Anthony K Yan; Shobha Potluri; Bruce R Donald; Chris Bailey-Kellogg
Journal:  J Comput Biol       Date:  2011-06-30       Impact factor: 1.479

6.  Structure of androcam supports specialized interactions with myosin VI.

Authors:  Mehul K Joshi; Sean Moran; Kathleen M Beckingham; Kevin R MacKenzie
Journal:  Proc Natl Acad Sci U S A       Date:  2012-07-31       Impact factor: 11.205

7.  Pressure dependence of side chain 13C chemical shifts in model peptides Ac-Gly-Gly-Xxx-Ala-NH2.

Authors:  Markus Beck Erlach; Joerg Koehler; Edson Crusca; Claudia E Munte; Masatsune Kainosho; Werner Kremer; Hans Robert Kalbitzer
Journal:  J Biomol NMR       Date:  2017-09-14       Impact factor: 2.835

8.  NMR relaxation parameters of methyl groups as a tool to map the interfaces of helix-helix interactions in membrane proteins.

Authors:  D M Lesovoy; K S Mineev; P E Bragin; O V Bocharova; E V Bocharov; A S Arseniev
Journal:  J Biomol NMR       Date:  2017-10-23       Impact factor: 2.835

9.  The structure of the zetazeta transmembrane dimer reveals features essential for its assembly with the T cell receptor.

Authors:  Matthew E Call; Jason R Schnell; Chenqi Xu; Regina A Lutz; James J Chou; Kai W Wucherpfennig
Journal:  Cell       Date:  2006-10-20       Impact factor: 41.582

10.  Structure and mechanism of the M2 proton channel of influenza A virus.

Authors:  Jason R Schnell; James J Chou
Journal:  Nature       Date:  2008-01-31       Impact factor: 49.962

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