Literature DB >> 28913741

Pressure dependence of side chain 13C chemical shifts in model peptides Ac-Gly-Gly-Xxx-Ala-NH2.

Markus Beck Erlach1, Joerg Koehler1, Edson Crusca2, Claudia E Munte1,3, Masatsune Kainosho4, Werner Kremer1, Hans Robert Kalbitzer5.   

Abstract

For evaluating the pressure responses of folded as well as intrinsically unfolded proteins detectable by NMR spectroscopy the availability of data from well-defined model systems is indispensable. In this work we report the pressure dependence of 13C chemical shifts of the side chain atoms in the protected tetrapeptides Ac-Gly-Gly-Xxx-Ala-NH2 (Xxx, one of the 20 canonical amino acids). Contrary to expectation the chemical shifts of a number of nuclei have a nonlinear dependence on pressure in the range from 0.1 to 200 MPa. The size of the polynomial pressure coefficients B 1 and B 2 is dependent on the type of atom and amino acid studied. For HN, N and Cα the first order pressure coefficient B 1 is also correlated to the chemical shift at atmospheric pressure. The first and second order pressure coefficients of a given type of carbon atom show significant linear correlations suggesting that the NMR observable pressure effects in the different amino acids have at least partly the same physical cause. In line with this observation the magnitude of the second order coefficients of nuclei being direct neighbors in the chemical structure also are weakly correlated. The downfield shifts of the methyl resonances suggest that gauche conformers of the side chains are not preferred with pressure. The valine and leucine methyl groups in the model peptides were assigned using stereospecifically 13C enriched amino acids with the pro-R carbons downfield shifted relative to the pro-S carbons.

Entities:  

Keywords:  13C shifts; Biosynthetically labeled; High pressure NMR; Pressure coefficients; Random coil peptides; Stereospecific assignment

Mesh:

Substances:

Year:  2017        PMID: 28913741     DOI: 10.1007/s10858-017-0134-5

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  57 in total

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Review 2.  Proteins under pressure. The influence of high hydrostatic pressure on structure, function and assembly of proteins and protein complexes.

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Journal:  Eur J Biochem       Date:  1994-04-15

3.  pH-dependent random coil (1)H, (13)C, and (15)N chemical shifts of the ionizable amino acids: a guide for protein pK a measurements.

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Journal:  J Biomol NMR       Date:  2014-09-20       Impact factor: 2.835

4.  Metal-bis(2-picolyl)amine complexes as state 1(T) inhibitors of activated Ras protein.

Authors:  Ina C Rosnizeck; Michael Spoerner; Tobias Harsch; Sandra Kreitner; Daniel Filchtinski; Christian Herrmann; Daniel Engel; Burkhard König; Hans Robert Kalbitzer
Journal:  Angew Chem Int Ed Engl       Date:  2012-09-20       Impact factor: 15.336

5.  The effects of guanidine hydrochloride on the 'random coil' conformations and NMR chemical shifts of the peptide series GGXGG.

Authors:  K W Plaxco; C J Morton; S B Grimshaw; J A Jones; M Pitkeathly; I D Campbell; C M Dobson
Journal:  J Biomol NMR       Date:  1997-10       Impact factor: 2.835

6.  Chemical exchange saturation transfer (CEST): what is in a name and what isn't?

Authors:  Peter C M van Zijl; Nirbhay N Yadav
Journal:  Magn Reson Med       Date:  2011-02-17       Impact factor: 4.668

7.  1H, 13C and 15N chemical shift referencing in biomolecular NMR.

Authors:  D S Wishart; C G Bigam; J Yao; F Abildgaard; H J Dyson; E Oldfield; J L Markley; B D Sykes
Journal:  J Biomol NMR       Date:  1995-09       Impact factor: 2.835

8.  Stereospecific nuclear magnetic resonance assignments of the methyl groups of valine and leucine in the DNA-binding domain of the 434 repressor by biosynthetically directed fractional 13C labeling.

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Journal:  Biochemistry       Date:  1989-09-19       Impact factor: 3.162

9.  'Random coil' 1H chemical shifts obtained as a function of temperature and trifluoroethanol concentration for the peptide series GGXGG.

Authors:  G Merutka; H J Dyson; P E Wright
Journal:  J Biomol NMR       Date:  1995-01       Impact factor: 2.835

Review 10.  An overview of CEST MRI for non-MR physicists.

Authors:  B Wu; G Warnock; M Zaiss; C Lin; M Chen; Z Zhou; L Mu; D Nanz; R Tuura; G Delso
Journal:  EJNMMI Phys       Date:  2016-08-26
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  2 in total

1.  Concentration-Dependent Structural Transition of the HIV-1 gp41 MPER Peptide into α-Helical Trimers.

Authors:  Sai Chaitanya Chiliveri; John M Louis; Ad Bax
Journal:  Angew Chem Int Ed Engl       Date:  2020-10-29       Impact factor: 16.823

2.  Pressure dependence of side chain 1H and 15N-chemical shifts in the model peptides Ac-Gly-Gly-Xxx-Ala-NH2.

Authors:  Markus Beck Erlach; Joerg Koehler; Claudia E Munte; Werner Kremer; Edson Crusca; Masatsune Kainosho; Hans Robert Kalbitzer
Journal:  J Biomol NMR       Date:  2020-06-22       Impact factor: 2.835

  2 in total

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