Literature DB >> 8742738

Extensible and object-oriented system Eos supplies a new environment for image analysis of electron micrographs of macromolecules.

T Yasunaga1, T Wakabayashi.   

Abstract

To study macromolecular structure by electron microscopy, a highly extensible and object-oriented system has been developed for image analysis. This system is named "Eos" (Extensible and object-oriented system). The system described here supplies an environment with four types of supports: (i) a group of small tools for image analysis, (ii) tools for integration of small tools, such as "Display2," (iii) tools for development, such as "maketool," and (iv) object-oriented libraries for development of new tools. Using Eos, electron micrographs can be analyzed by small tools and integration tools. In addition, Eos can be used to develop new tools based on new ideas because development tool and object-oriented libraries are provided. The examples of implemented small tools for image analysis include three-dimensional reconstruction of objects with helical symmetry, cluster analysis, and contour expression.

Mesh:

Substances:

Year:  1996        PMID: 8742738     DOI: 10.1006/jsbi.1996.0025

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  26 in total

1.  Novel actin-like filament structure from Clostridium tetani.

Authors:  David Popp; Akihiro Narita; Lin Jie Lee; Umesh Ghoshdastider; Bo Xue; Ramanujam Srinivasan; Mohan K Balasubramanian; Toshitsugu Tanaka; Robert C Robinson
Journal:  J Biol Chem       Date:  2012-04-18       Impact factor: 5.157

2.  Structure and functional characterization of Vibrio parahaemolyticus thermostable direct hemolysin.

Authors:  Itaru Yanagihara; Kumiko Nakahira; Tsutomu Yamane; Shuji Kaieda; Kouta Mayanagi; Daizo Hamada; Takashi Fukui; Kiyouhisa Ohnishi; Shin'ichiro Kajiyama; Toshiyuki Shimizu; Mamoru Sato; Takahisa Ikegami; Mitsunori Ikeguchi; Takeshi Honda; Hiroshi Hashimoto
Journal:  J Biol Chem       Date:  2010-03-24       Impact factor: 5.157

3.  Novel actin filaments from Bacillus thuringiensis form nanotubules for plasmid DNA segregation.

Authors:  Shimin Jiang; Akihiro Narita; David Popp; Umesh Ghoshdastider; Lin Jie Lee; Ramanujam Srinivasan; Mohan K Balasubramanian; Toshiro Oda; Fujiet Koh; Mårten Larsson; Robert C Robinson
Journal:  Proc Natl Acad Sci U S A       Date:  2016-02-12       Impact factor: 11.205

4.  An engineered chaperonin caging a guest protein: Structural insights and potential as a protein expression tool.

Authors:  Masahiro Furutani; Jun-Ichi Hata; Yasuhito Shomura; Keisuke Itami; Takao Yoshida; Yoshitaka Izumoto; Akiko Togi; Akira Ideno; Takuo Yasunaga; Kunio Miki; Tadashi Maruyama
Journal:  Protein Sci       Date:  2005-02       Impact factor: 6.725

5.  An actin homolog of the archaeon Thermoplasma acidophilum that retains the ancient characteristics of eukaryotic actin.

Authors:  Futoshi Hara; Kan Yamashiro; Naoki Nemoto; Yoshinori Ohta; Shin-ichi Yokobori; Takuo Yasunaga; Shin-ichi Hisanaga; Akihiko Yamagishi
Journal:  J Bacteriol       Date:  2006-12-22       Impact factor: 3.490

6.  Structural basis of actin filament capping at the barbed-end: a cryo-electron microscopy study.

Authors:  Akihiro Narita; Shuichi Takeda; Atsuko Yamashita; Yuichiro Maéda
Journal:  EMBO J       Date:  2006-11-16       Impact factor: 11.598

7.  Three-dimensional structure of cytoplasmic dynein bound to microtubules.

Authors:  Naoko Mizuno; Akihiro Narita; Takahide Kon; Kazuo Sutoh; Masahide Kikkawa
Journal:  Proc Natl Acad Sci U S A       Date:  2007-12-19       Impact factor: 11.205

8.  Molecular structure of the ParM polymer and the mechanism leading to its nucleotide-driven dynamic instability.

Authors:  David Popp; Akihiro Narita; Toshiro Oda; Tetsuro Fujisawa; Hiroshi Matsuo; Yasushi Nitanai; Mitsusada Iwasa; Kayo Maeda; Hirofumi Onishi; Yuichiro Maéda
Journal:  EMBO J       Date:  2008-01-10       Impact factor: 11.598

9.  Dynein pulls microtubules without rotating its stalk.

Authors:  Hironori Ueno; Takuo Yasunaga; Chikako Shingyoji; Keiko Hirose
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-08       Impact factor: 11.205

10.  Comparative analysis of the protein folding activities of two chaperonin subunits of Thermococcus strain KS-1: the effects of beryllium fluoride.

Authors:  Takao Yoshida; Ryo Iizuka; Keisuke Itami; Takuo Yasunaga; Haruhiko Sakuraba; Toshihisa Ohshima; Masafumi Yohda; Tadashi Maruyama
Journal:  Extremophiles       Date:  2006-10-28       Impact factor: 2.395

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