Literature DB >> 26873105

Novel actin filaments from Bacillus thuringiensis form nanotubules for plasmid DNA segregation.

Shimin Jiang1, Akihiro Narita2, David Popp3, Umesh Ghoshdastider1, Lin Jie Lee1, Ramanujam Srinivasan4, Mohan K Balasubramanian5, Toshiro Oda6, Fujiet Koh1, Mårten Larsson7, Robert C Robinson8.   

Abstract

Here we report the discovery of a bacterial DNA-segregating actin-like protein (BtParM) from Bacillus thuringiensis, which forms novel antiparallel, two-stranded, supercoiled, nonpolar helical filaments, as determined by electron microscopy. The BtParM filament features of supercoiling and forming antiparallel double-strands are unique within the actin fold superfamily, and entirely different to the straight, double-stranded, polar helical filaments of all other known ParMs and of eukaryotic F-actin. The BtParM polymers show dynamic assembly and subsequent disassembly in the presence of ATP. BtParR, the DNA-BtParM linking protein, stimulated ATP hydrolysis/phosphate release by BtParM and paired two supercoiled BtParM filaments to form a cylinder, comprised of four strands with inner and outer diameters of 57 Å and 145 Å, respectively. Thus, in this prokaryote, the actin fold has evolved to produce a filament system with comparable features to the eukaryotic chromosome-segregating microtubule.

Entities:  

Keywords:  ParM; actin; filament; microtubule; plasmid

Mesh:

Substances:

Year:  2016        PMID: 26873105      PMCID: PMC4780641          DOI: 10.1073/pnas.1600129113

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  37 in total

1.  Complete nucleotide sequence of pBMB67, a 67-kb plasmid from Bacillus thuringiensis strain YBT-1520.

Authors:  Liu Chao; Bao Qiyu; Song Fuping; Sun Ming; Huang Dafang; Liu Guiming; Yu Ziniu
Journal:  Plasmid       Date:  2006-08-09       Impact factor: 3.466

2.  Segrosome structure revealed by a complex of ParR with centromere DNA.

Authors:  Maria A Schumacher; Tiffany C Glover; Anthony J Brzoska; Slade O Jensen; Thomas D Dunham; Ronald A Skurray; Neville Firth
Journal:  Nature       Date:  2007-12-20       Impact factor: 49.962

3.  Structure and filament dynamics of the pSK41 actin-like ParM protein: implications for plasmid DNA segregation.

Authors:  David Popp; Weijun Xu; Akihiro Narita; Anthony J Brzoska; Ronald A Skurray; Neville Firth; Umesh Ghoshdastider; Umesh Goshdastider; Yuichiro Maéda; Robert C Robinson; Maria A Schumacher
Journal:  J Biol Chem       Date:  2010-01-27       Impact factor: 5.157

Review 4.  The evolution of compositionally and functionally distinct actin filaments.

Authors:  Peter W Gunning; Umesh Ghoshdastider; Shane Whitaker; David Popp; Robert C Robinson
Journal:  J Cell Sci       Date:  2015-03-18       Impact factor: 5.285

5.  GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit.

Authors:  Sander Pronk; Szilárd Páll; Roland Schulz; Per Larsson; Pär Bjelkmar; Rossen Apostolov; Michael R Shirts; Jeremy C Smith; Peter M Kasson; David van der Spoel; Berk Hess; Erik Lindahl
Journal:  Bioinformatics       Date:  2013-02-13       Impact factor: 6.937

6.  Prokaryotic DNA segregation by an actin-like filament.

Authors:  Jakob Møller-Jensen; Rasmus Bugge Jensen; Jan Löwe; Kenn Gerdes
Journal:  EMBO J       Date:  2002-06-17       Impact factor: 11.598

7.  Characterization of the cytoplasm of Escherichia coli K-12 as a function of external osmolarity. Implications for protein-DNA interactions in vivo.

Authors:  S Cayley; B A Lewis; H J Guttman; M T Record
Journal:  J Mol Biol       Date:  1991-11-20       Impact factor: 5.469

8.  Improved side-chain torsion potentials for the Amber ff99SB protein force field.

Authors:  Kresten Lindorff-Larsen; Stefano Piana; Kim Palmo; Paul Maragakis; John L Klepeis; Ron O Dror; David E Shaw
Journal:  Proteins       Date:  2010-06

9.  MolProbity: all-atom structure validation for macromolecular crystallography.

Authors:  Vincent B Chen; W Bryan Arendall; Jeffrey J Headd; Daniel A Keedy; Robert M Immormino; Gary J Kapral; Laura W Murray; Jane S Richardson; David C Richardson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-12-21

10.  Structures of actin-like ParM filaments show architecture of plasmid-segregating spindles.

Authors:  Tanmay A M Bharat; Garib N Murshudov; Carsten Sachse; Jan Löwe
Journal:  Nature       Date:  2015-04-27       Impact factor: 49.962

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  8 in total

Review 1.  Nuclear actin: ancient clue to evolution in eukaryotes?

Authors:  Csaba Bajusz; Péter Borkúti; Ildikó Kristó; Zoltán Kovács; Csilla Abonyi; Péter Vilmos
Journal:  Histochem Cell Biol       Date:  2018-07-17       Impact factor: 4.304

2.  Structure of the magnetosome-associated actin-like MamK filament at subnanometer resolution.

Authors:  Julien R C Bergeron; Rachel Hutto; Ertan Ozyamak; Nancy Hom; Jesse Hansen; Olga Draper; Meghan E Byrne; Sepehr Keyhani; Arash Komeili; Justin M Kollman
Journal:  Protein Sci       Date:  2016-08-19       Impact factor: 6.725

3.  Cryo-EM structure of the bacterial actin AlfA reveals unique assembly and ATP-binding interactions and the absence of a conserved subdomain.

Authors:  Gülsima D Usluer; Frank DiMaio; Shun Kai Yang; Jesse M Hansen; Jessica K Polka; R Dyche Mullins; Justin M Kollman
Journal:  Proc Natl Acad Sci U S A       Date:  2018-02-13       Impact factor: 11.205

Review 4.  Catching a Walker in the Act-DNA Partitioning by ParA Family of Proteins.

Authors:  Dipika Mishra; Ramanujam Srinivasan
Journal:  Front Microbiol       Date:  2022-05-26       Impact factor: 6.064

Review 5.  Structural complexity of filaments formed from the actin and tubulin folds.

Authors:  Shimin Jiang; Umesh Ghoshdastider; Akihiro Narita; David Popp; Robert C Robinson
Journal:  Commun Integr Biol       Date:  2016-11-23

6.  The structure of a 15-stranded actin-like filament from Clostridium botulinum.

Authors:  Fujiet Koh; Akihiro Narita; Lin Jie Lee; Kotaro Tanaka; Yong Zi Tan; Venkata P Dandey; David Popp; Robert C Robinson
Journal:  Nat Commun       Date:  2019-06-28       Impact factor: 14.919

Review 7.  Impact of taxanes on androgen receptor signaling.

Authors:  Shanshan Bai; Bryan Y Zhang; Yan Dong
Journal:  Asian J Androl       Date:  2019 May-Jun       Impact factor: 3.285

Review 8.  Evolution of polymer formation within the actin superfamily.

Authors:  Patrick R Stoddard; Tom A Williams; Ethan Garner; Buzz Baum
Journal:  Mol Biol Cell       Date:  2017-09-15       Impact factor: 4.138

  8 in total

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