Literature DB >> 22514279

Novel actin-like filament structure from Clostridium tetani.

David Popp1, Akihiro Narita, Lin Jie Lee, Umesh Ghoshdastider, Bo Xue, Ramanujam Srinivasan, Mohan K Balasubramanian, Toshitsugu Tanaka, Robert C Robinson.   

Abstract

Eukaryotic F-actin is constructed from two protofilaments that gently wind around each other to form a helical polymer. Several bacterial actin-like proteins (Alps) are also known to form F-actin-like helical arrangements from two protofilaments, yet with varied helical geometries. Here, we report a unique filament architecture of Alp12 from Clostridium tetani that is constructed from four protofilaments. Through fitting of an Alp12 monomer homology model into the electron microscopy data, the filament was determined to be constructed from two antiparallel strands, each composed of two parallel protofilaments. These four protofilaments form an open helical cylinder separated by a wide cleft. The molecular interactions within single protofilaments are similar to F-actin, yet interactions between protofilaments differ from those in F-actin. The filament structure and assembly and disassembly kinetics suggest Alp12 to be a dynamically unstable force-generating motor involved in segregating the pE88 plasmid, which encodes the lethal tetanus toxin, and thus a potential target for drug design. Alp12 can be repeatedly cycled between states of polymerization and dissociation, making it a novel candidate for incorporation into fuel-propelled nanobiopolymer machines.

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Year:  2012        PMID: 22514279      PMCID: PMC3375535          DOI: 10.1074/jbc.M112.341016

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  36 in total

1.  Using situs for flexible and rigid-body fitting of multiresolution single-molecule data.

Authors:  W Wriggers; S Birmanns
Journal:  J Struct Biol       Date:  2001 Feb-Mar       Impact factor: 2.867

Review 2.  A dynamic bacterial cytoskeleton.

Authors:  Rut Carballido-López; Jeff Errington
Journal:  Trends Cell Biol       Date:  2003-11       Impact factor: 20.808

3.  Capturing time-resolved changes in molecular structure by negative staining.

Authors:  Fa-Qing Zhao; Roger Craig
Journal:  J Struct Biol       Date:  2003-01       Impact factor: 2.867

4.  Structure and filament dynamics of the pSK41 actin-like ParM protein: implications for plasmid DNA segregation.

Authors:  David Popp; Weijun Xu; Akihiro Narita; Anthony J Brzoska; Ronald A Skurray; Neville Firth; Umesh Ghoshdastider; Umesh Goshdastider; Yuichiro Maéda; Robert C Robinson; Maria A Schumacher
Journal:  J Biol Chem       Date:  2010-01-27       Impact factor: 5.157

5.  F-actin-like filaments formed by plasmid segregation protein ParM.

Authors:  Fusinita van den Ent; Jakob Møller-Jensen; Linda A Amos; Kenn Gerdes; Jan Löwe
Journal:  EMBO J       Date:  2002-12-16       Impact factor: 11.598

6.  Filament structure, organization, and dynamics in MreB sheets.

Authors:  David Popp; Akihiro Narita; Kayo Maeda; Tetsuro Fujisawa; Umesh Ghoshdastider; Mitsusada Iwasa; Yuichiro Maéda; Robert C Robinson
Journal:  J Biol Chem       Date:  2010-03-11       Impact factor: 5.157

7.  Kinetic analysis of actin polymerization.

Authors:  E Nishida; H Sakai
Journal:  J Biochem       Date:  1983-04       Impact factor: 3.387

Review 8.  Many ways to build an actin filament.

Authors:  David Popp; Robert C Robinson
Journal:  Mol Microbiol       Date:  2011-03-14       Impact factor: 3.501

9.  Polymeric structures and dynamic properties of the bacterial actin AlfA.

Authors:  David Popp; Akihiro Narita; Umesh Ghoshdastider; Kayo Maeda; Yuichiro Maéda; Toshiro Oda; Tetsuro Fujisawa; Hirufumi Onishi; Kazuki Ito; Robert C Robinson
Journal:  J Mol Biol       Date:  2010-02-12       Impact factor: 5.469

10.  The genome sequence of Clostridium tetani, the causative agent of tetanus disease.

Authors:  Holger Bruggemann; Sebastian Baumer; Wolfgang Florian Fricke; Arnim Wiezer; Heiko Liesegang; Iwona Decker; Christina Herzberg; Rosa Martinez-Arias; Rainer Merkl; Anke Henne; Gerhard Gottschalk
Journal:  Proc Natl Acad Sci U S A       Date:  2003-01-27       Impact factor: 11.205

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  13 in total

1.  Novel actin filaments from Bacillus thuringiensis form nanotubules for plasmid DNA segregation.

Authors:  Shimin Jiang; Akihiro Narita; David Popp; Umesh Ghoshdastider; Lin Jie Lee; Ramanujam Srinivasan; Mohan K Balasubramanian; Toshiro Oda; Fujiet Koh; Mårten Larsson; Robert C Robinson
Journal:  Proc Natl Acad Sci U S A       Date:  2016-02-12       Impact factor: 11.205

2.  In search of the primordial actin filament.

Authors:  Umesh Ghoshdastider; Shimin Jiang; David Popp; Robert C Robinson
Journal:  Proc Natl Acad Sci U S A       Date:  2015-07-15       Impact factor: 11.205

Review 3.  Bacterial actins and their diversity.

Authors:  Ertan Ozyamak; Justin M Kollman; Arash Komeili
Journal:  Biochemistry       Date:  2013-09-24       Impact factor: 3.162

4.  Structure of the magnetosome-associated actin-like MamK filament at subnanometer resolution.

Authors:  Julien R C Bergeron; Rachel Hutto; Ertan Ozyamak; Nancy Hom; Jesse Hansen; Olga Draper; Meghan E Byrne; Sepehr Keyhani; Arash Komeili; Justin M Kollman
Journal:  Protein Sci       Date:  2016-08-19       Impact factor: 6.725

Review 5.  Catching a Walker in the Act-DNA Partitioning by ParA Family of Proteins.

Authors:  Dipika Mishra; Ramanujam Srinivasan
Journal:  Front Microbiol       Date:  2022-05-26       Impact factor: 6.064

6.  The bacterial actin MamK: in vitro assembly behavior and filament architecture.

Authors:  Ertan Ozyamak; Justin Kollman; David A Agard; Arash Komeili
Journal:  J Biol Chem       Date:  2012-11-30       Impact factor: 5.157

Review 7.  Prokaryotic cytoskeletons: protein filaments organizing small cells.

Authors:  James Wagstaff; Jan Löwe
Journal:  Nat Rev Microbiol       Date:  2018-01-22       Impact factor: 60.633

8.  Bacterial actin MreB forms antiparallel double filaments.

Authors:  Fusinita van den Ent; Thierry Izoré; Tanmay Am Bharat; Christopher M Johnson; Jan Löwe
Journal:  Elife       Date:  2014-05-02       Impact factor: 8.140

9.  Structure of the ParM filament at 8.5Å resolution.

Authors:  Pananghat Gayathri; Takashi Fujii; Keiichi Namba; Jan Löwe
Journal:  J Struct Biol       Date:  2013-02-24       Impact factor: 2.867

10.  Dynamic Filament Formation by a Divergent Bacterial Actin-Like ParM Protein.

Authors:  Anthony J Brzoska; Slade O Jensen; Deborah A Barton; Danielle S Davies; Robyn L Overall; Ronald A Skurray; Neville Firth
Journal:  PLoS One       Date:  2016-06-16       Impact factor: 3.240

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