Literature DB >> 20335168

Structure and functional characterization of Vibrio parahaemolyticus thermostable direct hemolysin.

Itaru Yanagihara1, Kumiko Nakahira, Tsutomu Yamane, Shuji Kaieda, Kouta Mayanagi, Daizo Hamada, Takashi Fukui, Kiyouhisa Ohnishi, Shin'ichiro Kajiyama, Toshiyuki Shimizu, Mamoru Sato, Takahisa Ikegami, Mitsunori Ikeguchi, Takeshi Honda, Hiroshi Hashimoto.   

Abstract

Thermostable direct hemolysin (TDH) is a major virulence factor of Vibrio parahaemolyticus that causes pandemic foodborne enterocolitis mediated by seafood. TDH exists as a tetramer in solution, and it possesses extreme hemolytic activity. Here, we present the crystal structure of the TDH tetramer at 1.5 A resolution. The TDH tetramer forms a central pore with dimensions of 23 A in diameter and approximately 50 A in depth. Pi-cation interactions between protomers comprising the tetramer were indispensable for hemolytic activity of TDH. The N-terminal region was intrinsically disordered outside of the pore. Molecular dynamic simulations suggested that water molecules permeate freely through the central and side channel pores. Electron micrographs showed that tetrameric TDH attached to liposomes, and some of the tetramer associated with liposome via one protomer. These findings imply a novel membrane attachment mechanism by a soluble tetrameric pore-forming toxin.

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Year:  2010        PMID: 20335168      PMCID: PMC2871494          DOI: 10.1074/jbc.M109.074526

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  29 in total

1.  Two structural transitions in membrane pore formation by pneumolysin, the pore-forming toxin of Streptococcus pneumoniae.

Authors:  R J Gilbert; J L Jiménez; S Chen; I J Tickle; J Rossjohn; M Parker; P W Andrew; H R Saibil
Journal:  Cell       Date:  1999-05-28       Impact factor: 41.582

2.  EMAN: semiautomated software for high-resolution single-particle reconstructions.

Authors:  S J Ludtke; P R Baldwin; W Chiu
Journal:  J Struct Biol       Date:  1999-12-01       Impact factor: 2.867

3.  Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V cholerae.

Authors:  Kozo Makino; Kenshiro Oshima; Ken Kurokawa; Katsushi Yokoyama; Takayuki Uda; Kenichi Tagomori; Yoshio Iijima; Masatomo Najima; Masayuki Nakano; Atsushi Yamashita; Yoshino Kubota; Shigenobu Kimura; Teruo Yasunaga; Takeshi Honda; Hideo Shinagawa; Masahira Hattori; Tetsuya Iida
Journal:  Lancet       Date:  2003-03-01       Impact factor: 79.321

Review 4.  Empirical force fields for biological macromolecules: overview and issues.

Authors:  Alexander D Mackerell
Journal:  J Comput Chem       Date:  2004-10       Impact factor: 3.376

5.  Refinement of macromolecular structures by the maximum-likelihood method.

Authors:  G N Murshudov; A A Vagin; E J Dodson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1997-05-01

6.  Automated MAD and MIR structure solution.

Authors:  T C Terwilliger; J Berendzen
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-04

7.  Partial rigid-body dynamics in NPT, NPAT and NPgammaT ensembles for proteins and membranes.

Authors:  Mitsunori Ikeguchi
Journal:  J Comput Chem       Date:  2004-03       Impact factor: 3.376

8.  Physical and genetic map of the genome of Vibrio parahaemolyticus: presence of two chromosomes in Vibrio species.

Authors:  Y Yamaichi; T Iida; K S Park; K Yamamoto; T Honda
Journal:  Mol Microbiol       Date:  1999-03       Impact factor: 3.501

9.  Maximum-likelihood density modification.

Authors:  T C Terwilliger
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2000-08

10.  Automated main-chain model building by template matching and iterative fragment extension.

Authors:  Thomas C Terwilliger
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-12-19
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  17 in total

1.  Establishment and Validation of RNA-Based Predictive Models for Understanding Survival of Vibrio parahaemolyticus in Oysters Stored at Low Temperatures.

Authors:  Chao Liao; Yong Zhao; Luxin Wang
Journal:  Appl Environ Microbiol       Date:  2017-03-02       Impact factor: 4.792

Review 2.  Role of pore-forming toxins in bacterial infectious diseases.

Authors:  Ferdinand C O Los; Tara M Randis; Raffi V Aroian; Adam J Ratner
Journal:  Microbiol Mol Biol Rev       Date:  2013-06       Impact factor: 11.056

3.  Regulation of Thermostable Direct Hemolysin and Biofilm Formation of Vibrio parahaemolyticus by Quorum-Sensing Genes luxM and luxS.

Authors:  Muhan Guo; Zhijia Fang; Lijun Sun; Dongfang Sun; Yaling Wang; Can Li; Rundong Wang; Yang Liu; Hanqiao Hu; Ying Liu; Defeng Xu; Ravi Gooneratne
Journal:  Curr Microbiol       Date:  2018-05-21       Impact factor: 2.188

Review 4.  Vibrio parahaemolyticus cell biology and pathogenicity determinants.

Authors:  Christopher A Broberg; Thomas J Calder; Kim Orth
Journal:  Microbes Infect       Date:  2011-07-07       Impact factor: 2.700

5.  Purification, crystallization and preliminary X-ray analysis of a thermostable direct haemolysin from Grimontia hollisae.

Authors:  Yu-Kuo Wang; Sheng-Cih Huang; Yi-Fang Wu; Yu-Ching Chen; Wen-Hung Chen; Yan-Ling Lin; Manoswini Nayak; Yan Ren Lin; Thomas Tien-Hsiung Li; Tung-Kung Wu
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-01-22

6.  Genes similar to the Vibrio parahaemolyticus virulence-related genes tdh, tlh, and vscC2 occur in other vibrionaceae species isolated from a pristine estuary.

Authors:  Savannah L Klein; Casandra K Gutierrez West; Diana M Mejia; Charles R Lovell
Journal:  Appl Environ Microbiol       Date:  2013-11-08       Impact factor: 4.792

7.  High frequency of virulence factor genes tdh, trh, and tlh in Vibrio parahaemolyticus strains isolated from a pristine estuary.

Authors:  Casandra K Gutierrez West; Savannah L Klein; Charles R Lovell
Journal:  Appl Environ Microbiol       Date:  2013-01-25       Impact factor: 4.792

8.  Site-directed mutations of thermostable direct hemolysin from Grimontia hollisae alter its arrhenius effect and biophysical properties.

Authors:  Yu-Kuo Wang; Sheng-Cih Huang; Yi-Fang Wu; Yu-Ching Chen; Yen-Ling Lin; Manoswini Nayak; Yan Ren Lin; Wen-Hung Chen; Yi-Rong Chiu; Thomas Tien-Hsiung Li; Bo-Sou Yeh; Tung-Kung Wu
Journal:  Int J Biol Sci       Date:  2011-03-31       Impact factor: 6.580

9.  Phylogenetic and in silico functional analyses of thermostable-direct hemolysin and tdh-related encoding genes in Vibrio parahaemolyticus and other Gram-negative bacteria.

Authors:  Sushanta K Bhowmik; Gururaja P Pazhani; Thandavarayan Ramamurthy
Journal:  Biomed Res Int       Date:  2014-07-08       Impact factor: 3.411

10.  Structural and biophysical characterization of Bacillus thuringiensis insecticidal proteins Cry34Ab1 and Cry35Ab1.

Authors:  Matthew S Kelker; Colin Berry; Steven L Evans; Reetal Pai; David G McCaskill; Nick X Wang; Joshua C Russell; Matthew D Baker; Cheng Yang; J W Pflugrath; Matthew Wade; Tim J Wess; Kenneth E Narva
Journal:  PLoS One       Date:  2014-11-12       Impact factor: 3.240

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