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Literature DB >> 8709282

Sequence analysis of the human DNA flanking sites of human immunodeficiency virus type 1 integration.

Abstract

Human immunodeficiency virus type 1 (HIV-1) tagged with the Escherichia coli supF gene has been used to clone integrated HIV-1 proviruses. Sequence analysis of the 600 to 800 bp of human DNA adjacent to 29 clones revealed a propensity for HIV-1 to integrate near the Alu class of human repetitive elements.

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Year: 1996 PMID： 8709282 PMCID： PMC190680 DOI： 10.1128/JVI.70.9.6459-6462.1996

Source DB: PubMed Journal: J Virol ISSN： 0022-538X Impact factor: 5.103

19 in total

1. Charons 36 to 40: multi enzyme, high capacity, recombination deficient replacement vectors with polylinkers and polystuffers.

Authors: I S Dunn; F R Blattner
Journal: Nucleic Acids Res Date: 1987-03-25 Impact factor: 16.971

2. Improved tools for biological sequence comparison.

Authors: W R Pearson; D J Lipman
Journal: Proc Natl Acad Sci U S A Date: 1988-04 Impact factor: 11.205

3. High-efficiency transformation of mammalian cells by plasmid DNA.

Authors: C Chen; H Okayama
Journal: Mol Cell Biol Date: 1987-08 Impact factor: 4.272

4. Analysis of the junctions between human immunodeficiency virus type 1 proviral DNA and human DNA.

Authors: C Vink; M Groenink; Y Elgersma; R A Fouchier; M Tersmette; R H Plasterk
Journal: J Virol Date: 1990-11 Impact factor: 5.103

5. Retrovirus integration and chromatin structure: Moloney murine leukemia proviral integration sites map near DNase I-hypersensitive sites.

Authors: H Rohdewohld; H Weiher; W Reik; R Jaenisch; M Breindl
Journal: J Virol Date: 1987-02 Impact factor: 5.103

6. 130 kb of DNA sequence reveals two new genes and a regional duplication distal to the human iduronate-2-sulfate sulfatase locus.

Authors: K M Timms; F Lu; Y Shen; C A Pierson; D M Muzny; Y Gu; D L Nelson; R A Gibbs
Journal: Genome Res Date: 1995-08 Impact factor: 9.043

7. Clusters of intragenic Alu repeats predispose the human C1 inhibitor locus to deleterious rearrangements.

Authors: D Stoppa-Lyonnet; P E Carter; T Meo; M Tosi
Journal: Proc Natl Acad Sci U S A Date: 1990-02 Impact factor: 11.205

8. Insertion mutagenesis of embryonal carcinoma cells by retroviruses.

Authors: W King; M D Patel; L I Lobel; S P Goff; M C Nguyen-Huu
Journal: Science Date: 1985-05-03 Impact factor: 47.728

9. Acceptor sites for retroviral integrations map near DNase I-hypersensitive sites in chromatin.

Authors: S Vijaya; D L Steffen; H L Robinson
Journal: J Virol Date: 1986-11 Impact factor: 5.103

10. Replication-competent Moloney murine leukemia virus carrying a bacterial suppressor tRNA gene: selective cloning of proviral and flanking host sequences.

Authors: W Reik; H Weiher; R Jaenisch
Journal: Proc Natl Acad Sci U S A Date: 1985-02 Impact factor: 11.205

43 in total

1. Processed pseudogenes of human endogenous retroviruses generated by LINEs: their integration, stability, and distribution.

Authors: Adam Pavlícek; Jan Paces; Daniel Elleder; Jirí Hejnar
Journal: Genome Res Date: 2002-03 Impact factor: 9.043

2. A high-throughput method for cloning and sequencing human immunodeficiency virus type 1 integration sites.

Authors: Sanggu Kim; Yein Kim; Teresa Liang; Janet S Sinsheimer; Samson A Chow
Journal: J Virol Date: 2006-09-13 Impact factor: 5.103

3. Weak palindromic consensus sequences are a common feature found at the integration target sites of many retroviruses.

Authors: Xiaolin Wu; Yuan Li; Bruce Crise; Shawn M Burgess; David J Munroe
Journal: J Virol Date: 2005-04 Impact factor: 5.103

4. HIV integration site selection: analysis by massively parallel pyrosequencing reveals association with epigenetic modifications.

Authors: Gary P Wang; Angela Ciuffi; Jeremy Leipzig; Charles C Berry; Frederic D Bushman
Journal: Genome Res Date: 2007-06-01 Impact factor: 9.043

5. Analysis of lentiviral vector integration in HIV+ study subjects receiving autologous infusions of gene modified CD4+ T cells.

Authors: Gary P Wang; Bruce L Levine; Gwendolyn K Binder; Charles C Berry; Nirav Malani; Gary McGarrity; Pablo Tebas; Carl H June; Frederic D Bushman
Journal: Mol Ther Date: 2009-03-03 Impact factor: 11.454

6. Chromosome structure and human immunodeficiency virus type 1 cDNA integration: centromeric alphoid repeats are a disfavored target.

Authors: S Carteau; C Hoffmann; F Bushman
Journal: J Virol Date: 1998-05 Impact factor: 5.103

7. Analysis of wild-type and mutant SL3-3 murine leukemia virus insertions in the c-myc promoter during lymphomagenesis reveals target site hot spots, virus-dependent patterns, and frequent error-prone gap repair.

Authors: Anne Ahlmann Nielsen; Annette Balle Sørensen; Jörg Schmidt; Finn Skou Pedersen
Journal: J Virol Date: 2005-01 Impact factor: 5.103