Literature DB >> 8703931

Role of adenosine 5'-triphosphate hydrolysis in the assembly of the bacteriophage T4 DNA replication holoenzyme complex.

A J Berdis1, S J Benkovic.   

Abstract

Steady-state and pre-steady-state rates of ATP hydrolysis by the 44/62 accessory protein were determined to elucidate the role of ATP hydrolysis in bacteriophage T4 holoenzyme complex formation. Steady-state ATPase measurements of the 44/62 protein under various combinations of 45 protein, DNA substrate, and T4 exo- polymerase indicate that although the 44/62 protein synergistically hydrolyzes ATP in the presence of 45 protein and DNA substrate, the ATPase activity of 44/62 is diminished substantially upon the formation of the holoenzyme complex. The decrease in activity is primarily in kcat while the K(m) for ATP is changed unsubstantially by the various combinations. Data suggest that the decrease in the rate of ATP hydrolysis upon the addition of T4 exo- polymerase in the presence of 45 protein and DNA substrate is due to formation of a stable holoenzyme complex consisting of only the 45 protein and T4 exo- polymerase in a 1:1 ratio. The 44/62 protein acts catalytically to load 45 protein onto the DNA substrate and does not remain a component of the holoenzyme complex. Pre-steady-state kinetic analysis of the ATP hydrolysis reaction catalyzed by the 44/62 protein loading the 45 protein onto the DNA substrate in the absence or presence of polymerase is biphasic, in which a burst in ATP hydrolysis precedes the steady-state rate of ATP hydrolysis. An identical burst in ATP consumption is obtained under either condition, indicating that ATP hydrolysis is not required to load polymerase into the holoenzyme complex. The data suggest one turnover of ATP at each of the four ATPase active sites of the 44/62 protein per 45 protein loaded. ATP hydrolysis by the 44/62 protein under conditions of holoenzyme complex formation is the rate-limiting step in holoenzyme complex formation. The process of holoenzyme formation appears to be identical for leading and lagging strand synthesis.

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Year:  1996        PMID: 8703931     DOI: 10.1021/bi952569w

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  16 in total

1.  Characterization of bacteriophage T4-coordinated leading- and lagging-strand synthesis on a minicircle substrate.

Authors:  F Salinas; S J Benkovic
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-20       Impact factor: 11.205

2.  Opening of a monomer-monomer interface of the trimeric bacteriophage T4-coded GP45 sliding clamp is required for clamp loading onto DNA.

Authors:  G J Latham; F Dong; P Pietroni; J M Dozono; D J Bacheller; P H von Hippel
Journal:  Proc Natl Acad Sci U S A       Date:  1999-10-26       Impact factor: 11.205

3.  Creating a dynamic picture of the sliding clamp during T4 DNA polymerase holoenzyme assembly by using fluorescence resonance energy transfer.

Authors:  M A Trakselis; S C Alley; E Abel-Santos; S J Benkovic
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-17       Impact factor: 11.205

4.  The dynamic processivity of the T4 DNA polymerase during replication.

Authors:  Jingsong Yang; Zhihao Zhuang; Rosa Maria Roccasecca; Michael A Trakselis; Stephen J Benkovic
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-17       Impact factor: 11.205

5.  Single-molecule investigation of the T4 bacteriophage DNA polymerase holoenzyme: multiple pathways of holoenzyme formation.

Authors:  R Derike Smiley; Zhihao Zhuang; Stephen J Benkovic; Gordon G Hammes
Journal:  Biochemistry       Date:  2006-07-04       Impact factor: 3.162

6.  The carboxyl terminus of the bacteriophage T4 DNA polymerase is required for holoenzyme complex formation.

Authors:  A J Berdis; P Soumillion; S J Benkovic
Journal:  Proc Natl Acad Sci U S A       Date:  1996-11-12       Impact factor: 11.205

7.  Kinetic analysis of PCNA clamp binding and release in the clamp loading reaction catalyzed by Saccharomyces cerevisiae replication factor C.

Authors:  Melissa R Marzahn; Jaclyn N Hayner; Jennifer A Meyer; Linda B Bloom
Journal:  Biochim Biophys Acta       Date:  2014-10-23

8.  RNA primer-primase complexes serve as the signal for polymerase recycling and Okazaki fragment initiation in T4 phage DNA replication.

Authors:  Michelle M Spiering; Philip Hanoian; Swathi Gannavaram; Stephen J Benkovic
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-15       Impact factor: 11.205

Review 9.  Replication clamps and clamp loaders.

Authors:  Mark Hedglin; Ravindra Kumar; Stephen J Benkovic
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-04-01       Impact factor: 10.005

Review 10.  Bacteriophage T4 genome.

Authors:  Eric S Miller; Elizabeth Kutter; Gisela Mosig; Fumio Arisaka; Takashi Kunisawa; Wolfgang Rüger
Journal:  Microbiol Mol Biol Rev       Date:  2003-03       Impact factor: 11.056

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