Literature DB >> 23545418

Replication clamps and clamp loaders.

Mark Hedglin1, Ravindra Kumar, Stephen J Benkovic.   

Abstract

To achieve the high degree of processivity required for DNA replication, DNA polymerases associate with ring-shaped sliding clamps that encircle the template DNA and slide freely along it. The closed circular structure of sliding clamps necessitates an enzyme-catalyzed mechanism, which not only opens them for assembly and closes them around DNA, but specifically targets them to sites where DNA synthesis is initiated and orients them correctly for replication. Such a feat is performed by multisubunit complexes known as clamp loaders, which use ATP to open sliding clamp rings and place them around the 3' end of primer-template (PT) junctions. Here we discuss the structure and composition of sliding clamps and clamp loaders from the three domains of life as well as T4 bacteriophage, and provide our current understanding of the clamp-loading process.

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Year:  2013        PMID: 23545418      PMCID: PMC3683903          DOI: 10.1101/cshperspect.a010165

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Biol        ISSN: 1943-0264            Impact factor:   10.005


  171 in total

1.  Mechanism of the E. coli tau processivity switch during lagging-strand synthesis.

Authors:  Frank P Leu; Roxana Georgescu; Mike O'Donnell
Journal:  Mol Cell       Date:  2003-02       Impact factor: 17.970

2.  Mechanism of loading the Escherichia coli DNA polymerase III beta sliding clamp on DNA. Bona fide primer/templates preferentially trigger the gamma complex to hydrolyze ATP and load the clamp.

Authors:  Brandon Ason; Renita Handayani; Christopher R Williams; Jeffrey G Bertram; Manju M Hingorani; Mike O'Donnell; Myron F Goodman; Linda B Bloom
Journal:  J Biol Chem       Date:  2003-01-08       Impact factor: 5.157

3.  Mechanism of the delta wrench in opening the beta sliding clamp.

Authors:  Chiara Indiani; Mike O'Donnell
Journal:  J Biol Chem       Date:  2003-07-08       Impact factor: 5.157

4.  Intermolecular ion pairs maintain the toroidal structure of Pyrococcus furiosus PCNA.

Authors:  Shigeki Matsumiya; Sonoko Ishino; Yoshizumi Ishino; Kosuke Morikawa
Journal:  Protein Sci       Date:  2003-04       Impact factor: 6.725

5.  Replication factor C clamp loader subunit arrangement within the circular pentamer and its attachment points to proliferating cell nuclear antigen.

Authors:  Nina Yao; Lee Coryell; Dan Zhang; Roxana E Georgescu; Jeff Finkelstein; Maria M Coman; Manju M Hingorani; Mike O'Donnell
Journal:  J Biol Chem       Date:  2003-10-06       Impact factor: 5.157

6.  Mechanism of loading the Escherichia coli DNA polymerase III sliding clamp: I. Two distinct activities for individual ATP sites in the gamma complex.

Authors:  Christopher R Williams; Anita K Snyder; Petr Kuzmic; Mike O'Donnell; Linda B Bloom
Journal:  J Biol Chem       Date:  2003-11-10       Impact factor: 5.157

7.  Protein-protein and protein-DNA interactions at the bacteriophage T4 DNA replication fork. Characterization of a fluorescently labeled DNA polymerase sliding clamp.

Authors:  D J Sexton; T E Carver; A J Berdis; S J Benkovic
Journal:  J Biol Chem       Date:  1996-11-08       Impact factor: 5.157

8.  A conserved domain of the large subunit of replication factor C binds PCNA and acts like a dominant negative inhibitor of DNA replication in mammalian cells.

Authors:  R Fotedar; R Mossi; P Fitzgerald; T Rousselle; G Maga; H Brickner; H Messier; S Kasibhatla; U Hübscher; A Fotedar
Journal:  EMBO J       Date:  1996-08-15       Impact factor: 11.598

9.  Ordered ATP hydrolysis in the gamma complex clamp loader AAA+ machine.

Authors:  Aaron Johnson; Mike O'Donnell
Journal:  J Biol Chem       Date:  2003-02-10       Impact factor: 5.157

10.  Reconstitution of human replication factor C from its five subunits in baculovirus-infected insect cells.

Authors:  J Cai; F Uhlmann; E Gibbs; H Flores-Rozas; C G Lee; B Phillips; J Finkelstein; N Yao; M O'Donnell; J Hurwitz
Journal:  Proc Natl Acad Sci U S A       Date:  1996-11-12       Impact factor: 11.205

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  57 in total

Review 1.  Torsins: not your typical AAA+ ATPases.

Authors:  April E Rose; Rebecca S H Brown; Christian Schlieker
Journal:  Crit Rev Biochem Mol Biol       Date:  2015-10-13       Impact factor: 8.250

Review 2.  The vaccinia virus DNA polymerase and its processivity factor.

Authors:  Maciej W Czarnecki; Paula Traktman
Journal:  Virus Res       Date:  2017-02-01       Impact factor: 3.303

Review 3.  A structural view of bacterial DNA replication.

Authors:  Aaron J Oakley
Journal:  Protein Sci       Date:  2019-04-17       Impact factor: 6.725

4.  Monitoring the Retention of Human Proliferating Cell Nuclear Antigen at Primer/Template Junctions by Proteins That Bind Single-Stranded DNA.

Authors:  Mark Hedglin; Mahesh Aitha; Stephen J Benkovic
Journal:  Biochemistry       Date:  2017-06-27       Impact factor: 3.162

5.  MutS homolog sliding clamps shield the DNA from binding proteins.

Authors:  Jeungphill Hanne; Brooke M Britton; Jonghyun Park; Jiaquan Liu; Juana Martín-López; Nathan Jones; Matthew Schoffner; Piotr Klajner; Ralf Bundschuh; Jong-Bong Lee; Richard Fishel
Journal:  J Biol Chem       Date:  2018-08-02       Impact factor: 5.157

6.  Recognition of a Key Anchor Residue by a Conserved Hydrophobic Pocket Ensures Subunit Interface Integrity in DNA Clamps.

Authors:  Senthil K Perumal; Xiaojun Xu; Chunli Yan; Ivaylo Ivanov; Stephen J Benkovic
Journal:  J Mol Biol       Date:  2019-04-30       Impact factor: 5.469

7.  Replication protein A dynamically regulates monoubiquitination of proliferating cell nuclear antigen.

Authors:  Mark Hedglin; Mahesh Aitha; Anthony Pedley; Stephen J Benkovic
Journal:  J Biol Chem       Date:  2019-01-30       Impact factor: 5.157

Review 8.  Mechanisms in E. coli and Human Mismatch Repair (Nobel Lecture).

Authors:  Paul Modrich
Journal:  Angew Chem Int Ed Engl       Date:  2016-05-20       Impact factor: 15.336

9.  Mechanism of asymmetric polymerase assembly at the eukaryotic replication fork.

Authors:  Roxana E Georgescu; Lance Langston; Nina Y Yao; Olga Yurieva; Dan Zhang; Jeff Finkelstein; Tani Agarwal; Mike E O'Donnell
Journal:  Nat Struct Mol Biol       Date:  2014-07-06       Impact factor: 15.369

10.  Stability of the human polymerase δ holoenzyme and its implications in lagging strand DNA synthesis.

Authors:  Mark Hedglin; Binod Pandey; Stephen J Benkovic
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-14       Impact factor: 11.205

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