Literature DB >> 8655491

Site-directed mutagenesis of conserved amino acids in the alpha subunit of toluene dioxygenase: potential mononuclear non-heme iron coordination sites.

H Jiang1, R E Parales, N A Lynch, D T Gibson.   

Abstract

The terminal oxygenase component of toluene dioxygenase from Pseudomonas putida F1 is an iron-sulfur protein (ISP(TOL)) that requires mononuclear iron for enzyme activity. Alignment of all available predicted amino acid sequences for the large (alpha) subunits of terminal oxygenases showed a conserved cluster of potential mononuclear iron-binding residues. These were between amino acids 210 and 230 in the alpha subunit (TodC1) of ISP(TOL). The conserved amino acids, Glu-214, Asp-219, Tyr-221, His-222, and His-228, were each independently replaced with an alanine residue by site-directed mutagenesis. Tyr-266 in TodC1, which has been suggested as an iron ligand, was treated in an identical manner. To assay toluene dioxygenase activity in the presence of TodC1 and its mutant forms, conditions for the reconstitution of wild-type ISP(TOL) activity from TodC1 and purified TodC2 (beta subunit) were developed and optimized. A mutation at Glu-214, Asp-219, His-222, or His-228 completely abolished toluene dioxygenase activity. TodC1 with an alanine substitution at either Tyr-221 or Tyr-266 retained partial enzyme activity (42 and 12%, respectively). In experiments with [14C]toluene, the two Tyr-->Ala mutations caused a reduction in the amount of Cis-[14C]-toluene dihydrodiol formed, whereas a mutation at Glu-214, Asp-219, His-222, or His-228 eliminated cis-toluene dihydrodiol formation. The expression level of all of the mutated TWO proteins was equivalent to that of wild-type TodC1 as judged by sodium dodecyl sulfate-polyacrylamide gel electrophoresis and Western blot (immunoblot) analyses. These results, in conjunction with the predicted amino acid sequences of 22 oxygenase components, suggest that the conserved motif Glu-X3-4,-Asp-X2-His-X4-5-His is critical for catalytic function and the glutamate, aspartate, and histidine residues may act as mononuclear iron ligands at the site of oxygen activation.

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Year:  1996        PMID: 8655491      PMCID: PMC178063          DOI: 10.1128/jb.178.11.3133-3139.1996

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  59 in total

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2.  Crystal structure of a bacterial non-haem iron hydroxylase that catalyses the biological oxidation of methane.

Authors:  A C Rosenzweig; C A Frederick; S J Lippard; P Nordlund
Journal:  Nature       Date:  1993-12-09       Impact factor: 49.962

3.  Sequences of genes encoding naphthalene dioxygenase in Pseudomonas putida strains G7 and NCIB 9816-4.

Authors:  M J Simon; T D Osslund; R Saunders; B D Ensley; S Suggs; A Harcourt; W C Suen; D L Cruden; D T Gibson; G J Zylstra
Journal:  Gene       Date:  1993-05-15       Impact factor: 3.688

4.  Identification and characterization of genes encoding polycyclic aromatic hydrocarbon dioxygenase and polycyclic aromatic hydrocarbon dihydrodiol dehydrogenase in Pseudomonas putida OUS82.

Authors:  N Takizawa; N Kaida; S Torigoe; T Moritani; T Sawada; S Satoh; H Kiyohara
Journal:  J Bacteriol       Date:  1994-04       Impact factor: 3.490

5.  Nuclear hyperfine coupling of nitrogen in the coordination sphere of the diiron center of methane monooxygenase hydroxylase.

Authors:  C J Bender; A C Rosenzweig; S J Lippard; J Peisach
Journal:  J Biol Chem       Date:  1994-06-10       Impact factor: 5.157

6.  Recombinant Escherichia coli strains synthesize active forms of naphthalene dioxygenase and its individual alpha and beta subunits.

Authors:  W C Suen; D T Gibson
Journal:  Gene       Date:  1994-05-27       Impact factor: 3.688

7.  Structure of protocatechuate 3,4-dioxygenase from Pseudomonas aeruginosa at 2.15 A resolution.

Authors:  D H Ohlendorf; A M Orville; J D Lipscomb
Journal:  J Mol Biol       Date:  1994-12-16       Impact factor: 5.469

8.  Metabolism of dibenzothiophene and naphthalene in Pseudomonas strains: complete DNA sequence of an upper naphthalene catabolic pathway.

Authors:  S A Denome; D C Stanley; E S Olson; K D Young
Journal:  J Bacteriol       Date:  1993-11       Impact factor: 3.490

9.  Identification of the bphA and bphB genes of Pseudomonas sp. strains KKS102 involved in degradation of biphenyl and polychlorinated biphenyls.

Authors:  M Fukuda; Y Yasukochi; Y Kikuchi; Y Nagata; K Kimbara; H Horiuchi; M Takagi; K Yano
Journal:  Biochem Biophys Res Commun       Date:  1994-07-29       Impact factor: 3.575

10.  Nucleotide sequence and functional analysis of the genes encoding 2,4,5-trichlorophenoxyacetic acid oxygenase in Pseudomonas cepacia AC1100.

Authors:  C E Danganan; R W Ye; D L Daubaras; L Xun; A M Chakrabarty
Journal:  Appl Environ Microbiol       Date:  1994-11       Impact factor: 4.792

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  43 in total

1.  Substrate specificity of naphthalene dioxygenase: effect of specific amino acids at the active site of the enzyme.

Authors:  R E Parales; K Lee; S M Resnick; H Jiang; D J Lessner; D T Gibson
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2.  The conserved Rieske oxygenase DAF-36/Neverland is a novel cholesterol-metabolizing enzyme.

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Journal:  J Biol Chem       Date:  2011-06-01       Impact factor: 5.157

Review 3.  The role of active-site residues in naphthalene dioxygenase.

Authors:  Rebecca E Parales
Journal:  J Ind Microbiol Biotechnol       Date:  2003-04-15       Impact factor: 3.346

4.  A small family of LLS1-related non-heme oxygenases in plants with an origin amongst oxygenic photosynthesizers.

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Journal:  Plant Mol Biol       Date:  2004-01       Impact factor: 4.076

5.  Complete sequence of a 184-kilobase catabolic plasmid from Sphingomonas aromaticivorans F199.

Authors:  M F Romine; L C Stillwell; K K Wong; S J Thurston; E C Sisk; C Sensen; T Gaasterland; J K Fredrickson; J D Saffer
Journal:  J Bacteriol       Date:  1999-03       Impact factor: 3.490

6.  Purification, crystallization and preliminary X-ray diffraction studies of the three components of the toluene 2,3-dioxygenase enzyme system.

Authors:  Kyoung Lee; Rosmarie Friemann; Juan V Parales; David T Gibson; S Ramaswamy
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2005-06-15

7.  Similar enzymes, different structures: phthalate dioxygenase is an alpha3alpha3 stacked hexamer, not an alpha3beta3 trimer like "normal" Rieske oxygenases.

Authors:  Michael Tarasev; Catherine S Kaddis; Sheng Yin; Joseph A Loo; John Burgner; David P Ballou
Journal:  Arch Biochem Biophys       Date:  2007-07-14       Impact factor: 4.013

8.  Subtle difference between benzene and toluene dioxygenases of Pseudomonas putida.

Authors:  Claire Bagnéris; Richard Cammack; Jeremy R Mason
Journal:  Appl Environ Microbiol       Date:  2005-03       Impact factor: 4.792

9.  Engineered 3-Ketosteroid 9α-Hydroxylases in Mycobacterium neoaurum: an Efficient Platform for Production of Steroid Drugs.

Authors:  Hao-Hao Liu; Li-Qin Xu; Kang Yao; Liang-Bin Xiong; Xin-Yi Tao; Min Liu; Feng-Qing Wang; Dong-Zhi Wei
Journal:  Appl Environ Microbiol       Date:  2018-07-02       Impact factor: 4.792

10.  Identification of chlorobenzene dioxygenase sequence elements involved in dechlorination of 1,2,4,5-tetrachlorobenzene.

Authors:  S Beil; J R Mason; K N Timmis; D H Pieper
Journal:  J Bacteriol       Date:  1998-11       Impact factor: 3.490

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