Literature DB >> 12695887

The role of active-site residues in naphthalene dioxygenase.

Rebecca E Parales1.   

Abstract

The three-component naphthalene dioxygenase enzyme system catalyzes the first step in the degradation of naphthalene by Pseudomonas sp. strain NCIB 9816-4. A member of a large family of bacterial Rieske non-heme iron oxygenases, naphthalene dioxygenase is known to oxidize over 60 different aromatic compounds, and many of the products are enantiomerically pure. The crystal structure of the oxygenase component revealed the enzyme to be an alpha(3)beta(3) hexamer and identified the amino acids located near the active site. Site-directed mutagenesis studies have identified the residues involved in electron transfer and those responsible for controlling the regioselectivity and enantioselectivity of the enzyme. The results of these studies suggest that naphthalene dioxygenase can be engineered to catalyze a new and extended range of useful reactions.

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Year:  2003        PMID: 12695887     DOI: 10.1007/s10295-003-0043-3

Source DB:  PubMed          Journal:  J Ind Microbiol Biotechnol        ISSN: 1367-5435            Impact factor:   3.346


  38 in total

Review 1.  Origins, current status, and future challenges of green chemistry.

Authors:  Paul T Anastas; Mary M Kirchhoff
Journal:  Acc Chem Res       Date:  2002-09       Impact factor: 22.384

2.  Multiple mutations at the active site of naphthalene dioxygenase affect regioselectivity and enantioselectivity.

Authors:  C L Yu; R E Parales; D T Gibson
Journal:  J Ind Microbiol Biotechnol       Date:  2001-08       Impact factor: 3.346

3.  Site-directed mutagenesis of conserved amino acids in the alpha subunit of toluene dioxygenase: potential mononuclear non-heme iron coordination sites.

Authors:  H Jiang; R E Parales; N A Lynch; D T Gibson
Journal:  J Bacteriol       Date:  1996-06       Impact factor: 3.490

4.  Cis-1,2-dihydroxy-1,2-dihydronaphthalene: a bacterial metabolite from naphthalene.

Authors:  D M Jerina; J W Daly; A M Jeffrey; D T Gibson
Journal:  Arch Biochem Biophys       Date:  1971-01       Impact factor: 4.013

5.  Enzyme specificity of 2-nitrotoluene 2,3-dioxygenase from Pseudomonas sp. strain JS42 is determined by the C-terminal region of the alpha subunit of the oxygenase component.

Authors:  J V Parales; R E Parales; S M Resnick; D T Gibson
Journal:  J Bacteriol       Date:  1998-03       Impact factor: 3.490

6.  2,4-Dinitrotoluene dioxygenase from Burkholderia sp. strain DNT: similarity to naphthalene dioxygenase.

Authors:  W C Suen; B E Haigler; J C Spain
Journal:  J Bacteriol       Date:  1996-08       Impact factor: 3.490

7.  Cloning and sequencing of the genes encoding 2-nitrotoluene dioxygenase from Pseudomonas sp. JS42.

Authors:  J V Parales; A Kumar; R E Parales; D T Gibson
Journal:  Gene       Date:  1996-11-28       Impact factor: 3.688

8.  Construction of hybrid biphenyl (bph) and toluene (tod) genes for functional analysis of aromatic ring dioxygenases.

Authors:  J Hirose; A Suyama; S Hayashida; K Furukawa
Journal:  Gene       Date:  1994-01-28       Impact factor: 3.688

9.  Involvement of the terminal oxygenase beta subunit in the biphenyl dioxygenase reactivity pattern toward chlorobiphenyls.

Authors:  Y Hurtubise; D Barriault; M Sylvestre
Journal:  J Bacteriol       Date:  1998-11       Impact factor: 3.490

10.  Structure of an aromatic-ring-hydroxylating dioxygenase-naphthalene 1,2-dioxygenase.

Authors:  B Kauppi; K Lee; E Carredano; R E Parales; D T Gibson; H Eklund; S Ramaswamy
Journal:  Structure       Date:  1998-05-15       Impact factor: 5.006

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  24 in total

1.  Microbial dioxygenase gene population shifts during polycyclic aromatic hydrocarbon biodegradation.

Authors:  Sinéad M Ní Chadhain; R Sean Norman; Karen V Pesce; Jerome J Kukor; Gerben J Zylstra
Journal:  Appl Environ Microbiol       Date:  2006-06       Impact factor: 4.792

2.  Crystal structure of the terminal oxygenase component of cumene dioxygenase from Pseudomonas fluorescens IP01.

Authors:  Xuesong Dong; Shinya Fushinobu; Eriko Fukuda; Tohru Terada; Shugo Nakamura; Kentaro Shimizu; Hideaki Nojiri; Toshio Omori; Hirofumi Shoun; Takayoshi Wakagi
Journal:  J Bacteriol       Date:  2005-04       Impact factor: 3.490

3.  A targeted real-time PCR assay for studying naphthalene degradation in the environment.

Authors:  Mari Nyyssönen; Reetta Piskonen; Merja Itävaara
Journal:  Microb Ecol       Date:  2006-09-30       Impact factor: 4.552

4.  Diversity and distribution of actinobacterial aromatic ring oxygenase genes across contrasting soil properties.

Authors:  Christopher A Weidow; Hee-Sung Bae; Ashvini Chauhan; Andrew Ogram
Journal:  Microb Ecol       Date:  2014-10-24       Impact factor: 4.552

5.  Re-evaluation of dioxygenase gene phylogeny for the development and validation of a quantitative assay for environmental aromatic hydrocarbon degraders.

Authors:  Paola Meynet; Ian M Head; David Werner; Russell J Davenport
Journal:  FEMS Microbiol Ecol       Date:  2015-05-04       Impact factor: 4.194

6.  Structural basis for regioselectivity and stereoselectivity of product formation by naphthalene 1,2-dioxygenase.

Authors:  Daniel J Ferraro; Adam L Okerlund; Jonathan C Mowers; S Ramaswamy
Journal:  J Bacteriol       Date:  2006-10       Impact factor: 3.490

7.  Characterization of novel carbazole catabolism genes from gram-positive carbazole degrader Nocardioides aromaticivorans IC177.

Authors:  Kengo Inoue; Hiroshi Habe; Hisakazu Yamane; Hideaki Nojiri
Journal:  Appl Environ Microbiol       Date:  2006-05       Impact factor: 4.792

8.  Identification of a novel dioxygenase involved in metabolism of o-xylene, toluene, and ethylbenzene by Rhodococcus sp. strain DK17.

Authors:  Dockyu Kim; Jong-Chan Chae; Gerben J Zylstra; Young-Soo Kim; Seong-Ki Kim; Myung Hee Nam; Young Min Kim; Eungbin Kim
Journal:  Appl Environ Microbiol       Date:  2004-12       Impact factor: 4.792

9.  Substrate specificity and structural characteristics of the novel Rieske nonheme iron aromatic ring-hydroxylating oxygenases NidAB and NidA3B3 from Mycobacterium vanbaalenii PYR-1.

Authors:  Ohgew Kweon; Seong-Jae Kim; James P Freeman; Jaekyeong Song; Songjoon Baek; Carl E Cerniglia
Journal:  mBio       Date:  2010-06-15       Impact factor: 7.867

10.  Crystal structure of dicamba monooxygenase: a Rieske nonheme oxygenase that catalyzes oxidative demethylation.

Authors:  Razvan Dumitru; Wen Zhi Jiang; Donald P Weeks; Mark A Wilson
Journal:  J Mol Biol       Date:  2009-07-15       Impact factor: 5.469

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