Literature DB >> 8646535

Using buried water molecules to explore the energy landscape of proteins.

V P Denisov1, J Peters, H D Hörlein, B Halle.   

Abstract

Buried water molecules constitute a highly conserved, integral part of nearly all known protein structures. Such water molecules exchange with external solvent as a result of protein conformational fluctuations. We report here the results of water (17)O and (2)H magnetic relaxation dispersion measurements on wild-type and mutant bovine pancreatic trypsin inhibitor in aqueous solution at 4-80 degrees C. These data lead to the first determination of the exchange rate of a water molecule buried in a protein. The strong temperature dependence of this rate is ascribed to large-scale conformational fluctuations in an energy landscape with a statistical ruggedness of approximately 10 kJ mol(-1).

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Year:  1996        PMID: 8646535     DOI: 10.1038/nsb0696-505

Source DB:  PubMed          Journal:  Nat Struct Biol        ISSN: 1072-8368


  41 in total

1.  Orientational order and dynamics of hydration water in a single crystal of bovine pancreatic trypsin inhibitor.

Authors:  K Venu; L A Svensson; B Halle
Journal:  Biophys J       Date:  1999-08       Impact factor: 4.033

2.  NMR detection of multiple transitions to low-populated states in azurin.

Authors:  Dmitry M Korzhnev; B Göran Karlsson; Vladislav Yu Orekhov; Martin Billeter
Journal:  Protein Sci       Date:  2003-01       Impact factor: 6.725

Review 3.  Protein hydration dynamics in solution: a critical survey.

Authors:  Bertil Halle
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2004-08-29       Impact factor: 6.237

4.  Molecular dynamics free energy calculations to assess the possibility of water existence in protein nonpolar cavities.

Authors:  Masataka Oikawa; Yoshiteru Yonetani
Journal:  Biophys J       Date:  2010-06-16       Impact factor: 4.033

5.  Protein self-association induced by macromolecular crowding: a quantitative analysis by magnetic relaxation dispersion.

Authors:  Karim Snoussi; Bertil Halle
Journal:  Biophys J       Date:  2005-01-21       Impact factor: 4.033

6.  Crystallographic study of hydration of an internal cavity in engineered proteins with buried polar or ionizable groups.

Authors:  Jamie L Schlessman; Colby Abe; Apostolos Gittis; Daniel A Karp; Michael A Dolan; Bertrand García-Moreno E
Journal:  Biophys J       Date:  2008-01-04       Impact factor: 4.033

7.  Early turn formation and chain collapse drive fast folding of the major cold shock protein CspA of Escherichia coli.

Authors:  Dung M Vu; Scott H Brewer; R Brian Dyer
Journal:  Biochemistry       Date:  2012-11-01       Impact factor: 3.162

8.  Water and backbone dynamics in a hydrated protein.

Authors:  Galina Diakova; Yanina A Goddard; Jean-Pierre Korb; Robert G Bryant
Journal:  Biophys J       Date:  2010-01-06       Impact factor: 4.033

9.  Millisecond timescale fluctuations in dihydrofolate reductase are exquisitely sensitive to the bound ligands.

Authors:  David D Boehr; Dan McElheny; H Jane Dyson; Peter E Wright
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-08       Impact factor: 11.205

10.  Cluster analysis of consensus water sites in thrombin and trypsin shows conservation between serine proteases and contributions to ligand specificity.

Authors:  P C Sanschagrin; L A Kuhn
Journal:  Protein Sci       Date:  1998-10       Impact factor: 6.725

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