Literature DB >> 15665132

Protein self-association induced by macromolecular crowding: a quantitative analysis by magnetic relaxation dispersion.

Karim Snoussi1, Bertil Halle.   

Abstract

In the presence of high concentrations of inert macromolecules, the self-association of proteins is strongly enhanced through an entropic, excluded-volume effect variously called macromolecular crowding or depletion attraction. Despite the predicted large magnitude of this universal effect and its far-reaching biological implications, few experimental studies of macromolecular crowding have been reported. Here, we introduce a powerful new technique, fast field-cycling magnetic relaxation dispersion, for investigating crowding effects on protein self-association equilibria. By recording the solvent proton spin relaxation rate over a wide range of magnetic field strengths, we determine the populations of coexisting monomers and decamers of bovine pancreatic trypsin inhibitor in the presence of dextran up to a macromolecular volume fraction of 27%. Already at a dextran volume fraction of 14%, we find a 30-fold increase of the decamer population and 510(5)-fold increase of the association constant. The analysis of these results, in terms of a statistical-mechanical model that incorporates polymer flexibility as well as the excluded volume of the protein, shows that the dramatic enhancement of bovine pancreatic trypsin inhibitor self-association can be quantitatively rationalized in terms of hard repulsive interactions.

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Year:  2005        PMID: 15665132      PMCID: PMC1305380          DOI: 10.1529/biophysj.104.055871

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  36 in total

1.  Effects of macromolecular crowding on protein folding and aggregation.

Authors:  B van den Berg; R J Ellis; C M Dobson
Journal:  EMBO J       Date:  1999-12-15       Impact factor: 11.598

2.  Effect of dextran on protein stability and conformation attributed to macromolecular crowding.

Authors:  Kenji Sasahara; Peter McPhie; Allen P Minton
Journal:  J Mol Biol       Date:  2003-02-28       Impact factor: 5.469

3.  Binding of bovine pancreatic trypsin inhibitor to trypsinogen: spectroscopic and volumetric studies.

Authors:  Rana Filfil; Arin Ratavosi; Tigran V Chalikian
Journal:  Biochemistry       Date:  2004-02-10       Impact factor: 3.162

4.  THE INTERACTION BETWEEN POLYSACCHARIDES AND OTHER MACROMOLECULES. 5. THE SOLUBILITY OF PROTEINS IN THE PRESENCE OF DEXTRAN.

Authors:  T C LAURENT
Journal:  Biochem J       Date:  1963-11       Impact factor: 3.857

5.  The partition of solutes between buffer solutions and solutions containing hyaluronic acid.

Authors:  A G OGSTON; C F PHELPS
Journal:  Biochem J       Date:  1961-04       Impact factor: 3.857

6.  Macromolecular crowding accelerates amyloid formation by human apolipoprotein C-II.

Authors:  Danny M Hatters; Allen P Minton; Geoffrey J Howlett
Journal:  J Biol Chem       Date:  2001-12-18       Impact factor: 5.157

Review 7.  Molecular crowding: analysis of effects of high concentrations of inert cosolutes on biochemical equilibria and rates in terms of volume exclusion.

Authors:  A P Minton
Journal:  Methods Enzymol       Date:  1998       Impact factor: 1.600

8.  The BPTI decamer observed in acidic pH crystal forms pre-exists as a stable species in solution.

Authors:  C Hamiaux; J Pérez; T Prangé; S Veesler; M Riès-Kautt; P Vachette
Journal:  J Mol Biol       Date:  2000-03-31       Impact factor: 5.469

9.  The decameric structure of bovine pancreatic trypsin inhibitor (BPTI) crystallized from thiocyanate at 2.7 A resolution.

Authors:  C Hamiaux; T Prangé; M Riès-Kautt; A Ducruix; S Lafont; J P Astier; S Veesler
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-01-01

10.  Polysaccharide elasticity governed by chair-boat transitions of the glucopyranose ring.

Authors:  P E Marszalek; A F Oberhauser; Y P Pang; J M Fernandez
Journal:  Nature       Date:  1998-12-17       Impact factor: 49.962

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  19 in total

1.  Serum albumin prevents protein aggregation and amyloid formation and retains chaperone-like activity in the presence of physiological ligands.

Authors:  Thomas E Finn; Andrea C Nunez; Margaret Sunde; Simon B Easterbrook-Smith
Journal:  J Biol Chem       Date:  2012-05-01       Impact factor: 5.157

2.  Generalized fundamental measure theory for atomistic modeling of macromolecular crowding.

Authors:  Sanbo Qin; Huan-Xiang Zhou
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2010-03-26

3.  A high-throughput method for detection of protein self-association and second virial coefficient using size-exclusion chromatography through simultaneous measurement of concentration and scattered light intensity.

Authors:  Harminder Bajaj; Vikas K Sharma; Devendra S Kalonia
Journal:  Pharm Res       Date:  2007-06-19       Impact factor: 4.200

4.  Static light scattering from concentrated protein solutions, I: General theory for protein mixtures and application to self-associating proteins.

Authors:  Allen P Minton
Journal:  Biophys J       Date:  2007-05-25       Impact factor: 4.033

5.  Using NMR to distinguish viscosity effects from nonspecific protein binding under crowded conditions.

Authors:  Conggang Li; Gary J Pielak
Journal:  J Am Chem Soc       Date:  2009-02-04       Impact factor: 15.419

6.  Macromolecular crowding modulates folding mechanism of alpha/beta protein apoflavodoxin.

Authors:  Dirar Homouz; Loren Stagg; Pernilla Wittung-Stafshede; Margaret S Cheung
Journal:  Biophys J       Date:  2009-01       Impact factor: 4.033

7.  Common crowding agents have only a small effect on protein-protein interactions.

Authors:  Yael Phillip; Eilon Sherman; Gilad Haran; Gideon Schreiber
Journal:  Biophys J       Date:  2009-08-05       Impact factor: 4.033

Review 8.  Macromolecular crowding and confinement: biochemical, biophysical, and potential physiological consequences.

Authors:  Huan-Xiang Zhou; Germán Rivas; Allen P Minton
Journal:  Annu Rev Biophys       Date:  2008       Impact factor: 12.981

Review 9.  Protein-protein interactions in a crowded environment.

Authors:  Apratim Bhattacharya; Young C Kim; Jeetain Mittal
Journal:  Biophys Rev       Date:  2013-04-16

Review 10.  Macromolecular Crowding In Vitro, In Vivo, and In Between.

Authors:  Germán Rivas; Allen P Minton
Journal:  Trends Biochem Sci       Date:  2016-09-23       Impact factor: 13.807

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