Literature DB >> 8633041

Truncated elongation factor G lacking the G domain promotes translocation of the 3' end but not of the anticodon domain of peptidyl-tRNA.

C Borowski1, M V Rodnina, W Wintermeyer.   

Abstract

The mechanism by which elongation factor G (EF-G) catalyzes the translocation of tRNAs and mRNA on the ribosome is not known. The reaction requires GTP, which is hydrolyzed to GDP. Here we show that EF-G from Escherichia coli lacking the G domain still catalyzed partial translocation in that it promoted the transfer of the 3' end of peptidyl-tRNA to the P site on the 50S ribosomal subunit into a puromycin-reactive state in a slow-turnover reaction. In contrast, it did not bring about translocation on the 30S subunit, since (i) deacylated tRNA was not released from the P site and (ii) the A site remained blocked for aminoacyl-tRNA binding during and after partial translocation. The reaction probably represents the first EF-G-dependent step of translocation that follows the spontaneous formation of the A/P state that is not puromycin-reactive [Moazed, D. & Noller, H. F. (1989) Nature (London) 342, 142-148]. In the complete system--i.e., with intact EF-G and GTP--the 50S phase of translocation is rapidly followed by the 30S phase during which the tRNAs together with the mRNA are shifted on the small ribosomal subunit, and GTP is hydrolyzed. As to the mechanism of EF-G function, the results show that the G domain has an important role, presumably exerted through interactions with other domains of EF-G, in the promotion of translocation on the small ribosomal subunit. The G domain's intramolecular interactions are likely to be modulated by GTP binding and hydrolysis.

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Year:  1996        PMID: 8633041      PMCID: PMC39512          DOI: 10.1073/pnas.93.9.4202

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  24 in total

1.  Factor-free ("non-enzymic") and factor-dependent systems of translation of polyuridylic acid by Escherichia coli ribosomes.

Authors:  L P Gavrilova; O E Kostiashkina; V E Koteliansky; N M Rutkevitch; A S Spirin
Journal:  J Mol Biol       Date:  1976-03-15       Impact factor: 5.469

2.  Selection of the mRNA translation initiation region by Escherichia coli ribosomes.

Authors:  R A Calogero; C L Pon; M A Canonaco; C O Gualerzi
Journal:  Proc Natl Acad Sci U S A       Date:  1988-09       Impact factor: 11.205

3.  Mutations in ribosomal proteins L7/L12 perturb EF-G and EF-Tu functions.

Authors:  N Bilgin; L A Kirsebom; M Ehrenberg; C G Kurland
Journal:  Biochimie       Date:  1988-05       Impact factor: 4.079

4.  A base pair between tRNA and 23S rRNA in the peptidyl transferase centre of the ribosome.

Authors:  R R Samaha; R Green; H F Noller
Journal:  Nature       Date:  1995-09-28       Impact factor: 49.962

5.  The nucleotide sequence of the Escherichia coli fus gene, coding for elongation factor G.

Authors:  J M Zengel; R H Archer; L Lindahl
Journal:  Nucleic Acids Res       Date:  1984-02-24       Impact factor: 16.971

Review 6.  Ribosomal translocation: facts and models.

Authors:  A S Spirin
Journal:  Prog Nucleic Acid Res Mol Biol       Date:  1985

7.  The histidine residue of codon 715 is essential for function of elongation factor 2.

Authors:  F Omura; K Kohno; T Uchida
Journal:  Eur J Biochem       Date:  1989-03-01

8.  Reduced ribosomal binding of eukaryotic elongation factor 2 following ADP-ribosylation. Difference in binding selectivity between polyribosomes and reconstituted monoribosomes.

Authors:  O Nygård; L Nilsson
Journal:  Biochim Biophys Acta       Date:  1985-02-20

9.  GTP consumption of elongation factor Tu during translation of heteropolymeric mRNAs.

Authors:  M V Rodnina; W Wintermeyer
Journal:  Proc Natl Acad Sci U S A       Date:  1995-03-14       Impact factor: 11.205

10.  Effects of the mutation glycine-222----aspartic acid on the functions of elongation factor Tu.

Authors:  G W Swart; A Parmeggiani; B Kraal; L Bosch
Journal:  Biochemistry       Date:  1987-04-07       Impact factor: 3.162

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  17 in total

1.  Identification of molecular interactions between P-site tRNA and the ribosome essential for translocation.

Authors:  J S Feinberg; S Joseph
Journal:  Proc Natl Acad Sci U S A       Date:  2001-09-18       Impact factor: 11.205

Review 2.  After the ribosome structure: how does translocation work?

Authors:  Simpson Joseph
Journal:  RNA       Date:  2003-02       Impact factor: 4.942

Review 3.  Evolutionary conservation of reactions in translation.

Authors:  M Clelia Ganoza; Michael C Kiel; Hiroyuki Aoki
Journal:  Microbiol Mol Biol Rev       Date:  2002-09       Impact factor: 11.056

4.  tRNA dynamics on the ribosome during translation.

Authors:  Scott C Blanchard; Harold D Kim; Ruben L Gonzalez; Joseph D Puglisi; Steven Chu
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-18       Impact factor: 11.205

5.  Reverse translocation of tRNA in the ribosome.

Authors:  Shinichiro Shoji; Sarah E Walker; Kurt Fredrick
Journal:  Mol Cell       Date:  2006-12-28       Impact factor: 17.970

6.  Kinetically competent intermediates in the translocation step of protein synthesis.

Authors:  Dongli Pan; Stanislav V Kirillov; Barry S Cooperman
Journal:  Mol Cell       Date:  2007-02-23       Impact factor: 17.970

7.  Interaction strengths between the ribosome and tRNA at various steps of translocation.

Authors:  Chen-Yu Liu; Mohd Tanvir Qureshi; Tae-Hee Lee
Journal:  Biophys J       Date:  2011-05-04       Impact factor: 4.033

8.  The "allosteric three-site model" of elongation cannot be confirmed in a well-defined ribosome system from Escherichia coli.

Authors:  Y P Semenkov; M V Rodnina; W Wintermeyer
Journal:  Proc Natl Acad Sci U S A       Date:  1996-10-29       Impact factor: 11.205

9.  Visualization of elongation factor G on the Escherichia coli 70S ribosome: the mechanism of translocation.

Authors:  R K Agrawal; P Penczek; R A Grassucci; J Frank
Journal:  Proc Natl Acad Sci U S A       Date:  1998-05-26       Impact factor: 11.205

10.  EF-G catalyzes tRNA translocation by disrupting interactions between decoding center and codon-anticodon duplex.

Authors:  Guangqiao Liu; Guangtao Song; Danyang Zhang; Dejiu Zhang; Zhikai Li; Zhixin Lyu; Jianshu Dong; John Achenbach; Weimin Gong; Xin Sheng Zhao; Knud H Nierhaus; Yan Qin
Journal:  Nat Struct Mol Biol       Date:  2014-08-10       Impact factor: 15.369

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