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Literature DB >> 12554856

After the ribosome structure: how does translocation work?

Abstract

Structures of the ribosomal large and small subunits have been solved to atomic resolution by X-ray crystallography. These structures provide a new foundation to address the complex process of protein biosynthesis by the ribosome. Translocation of the tRNA-mRNA complex is one of the most fascinating tasks performed by the ribosome. The impact of the crystal structures in understanding the molecular mechanism of translocation is highlighted in this review.

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Year: 2003 PMID： 12554856 PMCID： PMC1370379 DOI： 10.1261/rna.2163103

Source DB: PubMed Journal: RNA ISSN： 1355-8382 Impact factor: 4.942

46 in total

1. Major rearrangements in the 70S ribosomal 3D structure caused by a conformational switch in 16S ribosomal RNA.

Authors: I S Gabashvili; R K Agrawal; R Grassucci; C L Squires; A E Dahlberg; J Frank
Journal: EMBO J Date: 1999-11-15 Impact factor: 11.598

2. The complete atomic structure of the large ribosomal subunit at 2.4 A resolution.

Authors: N Ban; P Nissen; J Hansen; P B Moore; T A Steitz
Journal: Science Date: 2000-08-11 Impact factor: 47.728

3. A ratchet-like inter-subunit reorganization of the ribosome during translocation.

Authors: J Frank; R K Agrawal
Journal: Nature Date: 2000-07-20 Impact factor: 49.962

4. Structure of functionally activated small ribosomal subunit at 3.3 angstroms resolution.

Authors: F Schluenzen; A Tocilj; R Zarivach; J Harms; M Gluehmann; D Janell; A Bashan; H Bartels; I Agmon; F Franceschi; A Yonath
Journal: Cell Date: 2000-09-01 Impact factor: 41.582

5. Conformationally restricted elongation factor G retains GTPase activity but is inactive in translocation on the ribosome.

Authors: F Peske; N B Matassova; A Savelsbergh; M V Rodnina; W Wintermeyer
Journal: Mol Cell Date: 2000-08 Impact factor: 17.970

6. Structure of the 30S ribosomal subunit.

Authors: B T Wimberly; D E Brodersen; W M Clemons; R J Morgan-Warren; A P Carter; C Vonrhein; T Hartsch; V Ramakrishnan
Journal: Nature Date: 2000-09-21 Impact factor: 49.962

7. The structural basis of ribosome activity in peptide bond synthesis.

Authors: P Nissen; J Hansen; N Ban; P B Moore; T A Steitz
Journal: Science Date: 2000-08-11 Impact factor: 47.728

Review 8. Molecular movement inside the translational engine.

Authors: K S Wilson; H F Noller
Journal: Cell Date: 1998-02-06 Impact factor: 41.582

9. Role of domains 4 and 5 in elongation factor G functions on the ribosome.

Authors: A Savelsbergh; N B Matassova; M V Rodnina; W Wintermeyer
Journal: J Mol Biol Date: 2000-07-21 Impact factor: 5.469

10. Periodic conformational changes in rRNA: monitoring the dynamics of translating ribosomes.

Authors: N Polacek; S Patzke; K H Nierhaus; A Barta
Journal: Mol Cell Date: 2000-07 Impact factor: 17.970

15 in total

1. Conserved but nonessential interaction of SRP RNA with translation factor EF-G.

Authors: Madi Bidya Sagar; Louise Lucast; Jennifer A Doudna
Journal: RNA Date: 2004-05 Impact factor: 4.942

2. Participation of the tRNA A76 hydroxyl groups throughout translation.

Authors: Joshua S Weinger; Scott A Strobel
Journal: Biochemistry Date: 2006-05-16 Impact factor: 3.162

3. Structural basis for mRNA and tRNA positioning on the ribosome.

Authors: Veysel Berk; Wen Zhang; Raj D Pai; Jamie H D Cate; Jamie H Doudna Cate
Journal: Proc Natl Acad Sci U S A Date: 2006-10-12 Impact factor: 11.205

4. Pokeweed antiviral protein depurinates the sarcin/ricin loop of the rRNA prior to binding of aminoacyl-tRNA to the ribosomal A-site.

Authors: Sheila Mansouri; Emad Nourollahzadeh; Katalin A Hudak
Journal: RNA Date: 2006-08-03 Impact factor: 4.942

5. Taura syndrome virus IRES initiates translation by binding its tRNA-mRNA-like structural element in the ribosomal decoding center.

Authors: Cha San Koh; Axel F Brilot; Nikolaus Grigorieff; Andrei A Korostelev
Journal: Proc Natl Acad Sci U S A Date: 2014-06-09 Impact factor: 11.205

6. Nascent peptide-mediated translation elongation arrest coupled with mRNA degradation in the CGS1 gene of Arabidopsis.

Authors: Hitoshi Onouchi; Yoko Nagami; Yuhi Haraguchi; Mari Nakamoto; Yoshiko Nishimura; Ryoko Sakurai; Nobuhiro Nagao; Daisuke Kawasaki; Yoshitomo Kadokura; Satoshi Naito
Journal: Genes Dev Date: 2005-07-18 Impact factor: 11.361

7. Crystal structure of RimI from Salmonella typhimurium LT2, the GNAT responsible for N(alpha)-acetylation of ribosomal protein S18.

Authors: Matthew W Vetting; David C Bareich; Michael Yu; John S Blanchard
Journal: Protein Sci Date: 2008-07-02 Impact factor: 6.725