Literature DB >> 8604311

Structural characterization of U*-1915 in domain IV from Escherichia coli 23S ribosomal RNA as 3-methylpseudouridine.

J A Kowalak1, E Bruenger, T Hashizume, J M Peltier, J Ofengand, J A McCloskey.   

Abstract

Mass spectrometry-based methods have been used to study post-transcriptional modification in the 1900-1974 nt segment of domain IV in 23S rRNA of Escherichia coli, a region which interacts with domain V in forming the three- dimensional structure of the peptidyl transferase center within the ribosome. A nucleoside constituent of M r 258 (U*)which occurs at position 1915, within the highly modified oligonucleotide sequence 1911-psiAACU*Apsi-1917, was characterized as 3-methylpseudouridine (m3psi). The assignment was confirmed by chemical synthesis of m3psi and comparison with the natural nucleoside by liquid chromatography-mass spectrometry. 3-Methylpseudouridine is previously unknown in nature and is the only known derivative of the common modified nucleoside pseudouridine thus far found in bacterial rRNA.

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Year:  1996        PMID： 8604311      PMCID： PMC145692          DOI： 10.1093/nar/24.4.688

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  37 in total

1.  Pseudouridine, a carbon-carbon linked ribonucleoside in ribonucleic acids: isolation, structure, and chemical characteristics.

Authors:  W E COHN
Journal:  J Biol Chem       Date:  1960-05       Impact factor: 5.157

2.  The single pseudouridine residue in Escherichia coli 16S RNA is located at position 516.

Authors:  A Bakin; J A Kowalak; J A McCloskey; J Ofengand
Journal:  Nucleic Acids Res       Date:  1994-09-11       Impact factor: 16.971

Review 3.  Summary: the modified nucleosides of RNA.

Authors:  P A Limbach; P F Crain; J A McCloskey
Journal:  Nucleic Acids Res       Date:  1994-06-25       Impact factor: 16.971

4.  Posttranscriptional modification of the central loop of domain V in Escherichia coli 23 S ribosomal RNA.

Authors:  J A Kowalak; E Bruenger; J A McCloskey
Journal:  J Biol Chem       Date:  1995-07-28       Impact factor: 5.157

5.  A base pair between tRNA and 23S rRNA in the peptidyl transferase centre of the ribosome.

Authors:  R R Samaha; R Green; H F Noller
Journal:  Nature       Date:  1995-09-28       Impact factor: 49.962

6.  Stabilization of RNA stacking by pseudouridine.

Authors:  D R Davis
Journal:  Nucleic Acids Res       Date:  1995-12-25       Impact factor: 16.971

7.  A novel method for the determination of post-transcriptional modification in RNA by mass spectrometry.

Authors:  J A Kowalak; S C Pomerantz; P F Crain; J A McCloskey
Journal:  Nucleic Acids Res       Date:  1993-09-25       Impact factor: 16.971

Review 8.  Pseudouridine and O2'-methylated nucleosides. Significance of their selective occurrence in rRNA domains that function in ribosome-catalyzed synthesis of the peptide bonds in proteins.

Authors:  B G Lane; J Ofengand; M W Gray
Journal:  Biochimie       Date:  1995       Impact factor: 4.079

9.  Clustering of pseudouridine residues around the peptidyltransferase center of yeast cytoplasmic and mitochondrial ribosomes.

Authors:  A Bakin; B G Lane; J Ofengand
Journal:  Biochemistry       Date:  1994-11-15       Impact factor: 3.162

10.  Four newly located pseudouridylate residues in Escherichia coli 23S ribosomal RNA are all at the peptidyltransferase center: analysis by the application of a new sequencing technique.

Authors:  A Bakin; J Ofengand
Journal:  Biochemistry       Date:  1993-09-21       Impact factor: 3.162
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  25 in total

1.  Posttranscriptional modifications in the A-loop of 23S rRNAs from selected archaea and eubacteria.

Authors:  M A Hansen; F Kirpekar; W Ritterbusch; B Vester
Journal:  RNA       Date:  2002-02       Impact factor: 4.942

2.  Identification of the mass-silent post-transcriptionally modified nucleoside pseudouridine in RNA by matrix-assisted laser desorption/ionization mass spectrometry.

Authors:  K G Patteson; L P Rodicio; P A Limbach
Journal:  Nucleic Acids Res       Date:  2001-05-15       Impact factor: 16.971

Review 3.  Expanding the nucleotide repertoire of the ribosome with post-transcriptional modifications.

Authors:  Christine S Chow; Tek N Lamichhane; Santosh K Mahto
Journal:  ACS Chem Biol       Date:  2007-09-21       Impact factor: 5.100

4.  The RNA modification database.

Authors:  P F Crain; J A McCloskey
Journal:  Nucleic Acids Res       Date:  1997-01-01       Impact factor: 16.971

5.  Unique structural and stabilizing roles for the individual pseudouridine residues in the 1920 region of Escherichia coli 23S rRNA.

Authors:  M Meroueh; P J Grohar; J Qiu; J SantaLucia; S A Scaringe; C S Chow
Journal:  Nucleic Acids Res       Date:  2000-05-15       Impact factor: 16.971

6.  The development of peptide ligands that target helix 69 rRNA of bacterial ribosomes.

Authors:  Danielle N Dremann; Christine S Chow
Journal:  Bioorg Med Chem       Date:  2016-07-25       Impact factor: 3.641

7.  The antituberculosis antibiotic capreomycin inhibits protein synthesis by disrupting interaction between ribosomal proteins L12 and L10.

Authors:  Yuan Lin; Yan Li; Ningyu Zhu; Yanxing Han; Wei Jiang; Yanchang Wang; Shuyi Si; Jiandong Jiang
Journal:  Antimicrob Agents Chemother       Date:  2014-01-21       Impact factor: 5.191

8.  Number, position, and significance of the pseudouridines in the large subunit ribosomal RNA of Haloarcula marismortui and Deinococcus radiodurans.

Authors:  Mark Del Campo; Claudia Recinos; Giscard Yanez; Steven C Pomerantz; Rebecca Guymon; Pamela F Crain; James A McCloskey; James Ofengand
Journal:  RNA       Date:  2005-02       Impact factor: 4.942

9.  Crystal structure of the catalytic domain of RluD, the only rRNA pseudouridine synthase required for normal growth of Escherichia coli.

Authors:  Mark Del Campo; James Ofengand; Arun Malhotra
Journal:  RNA       Date:  2004-02       Impact factor: 4.942

10.  Selection of heptapeptides that bind helix 69 of bacterial 23S ribosomal RNA.

Authors:  Moninderpal Kaur; Chamila N Rupasinghe; Edvin Klosi; Mark R Spaller; Christine S Chow
Journal:  Bioorg Med Chem       Date:  2013-01-10       Impact factor: 3.641
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