Literature DB >> 7524026

The single pseudouridine residue in Escherichia coli 16S RNA is located at position 516.

A Bakin1, J A Kowalak, J A McCloskey, J Ofengand.   

Abstract

The number and location of pseudouridine residues in Escherichia coli 16S ribosomal RNA has been determined by a combination of direct and indirect methods. Only one residue was found, at position 516. This site is at the 5'-end of one of the three most highly conserved long sequences of this RNA molecule. A number of experimental findings have strongly implicated this loop in the fidelity of codon recognition by A-site bound tRNA. By virtue of its location, we suggest that psi 516 may also play a role in maintaining the fidelity of protein synthesis.

Entities:  

Mesh：

Substances：

Year:  1994        PMID： 7524026      PMCID： PMC308345          DOI： 10.1093/nar/22.18.3681

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  37 in total

1.  Labile acetylated uracil derivatives.

Authors:  L B SPECTOR; E B KELLER
Journal:  J Biol Chem       Date:  1958-05       Impact factor: 5.157

Review 2.  Summary: the modified nucleosides of RNA.

Authors:  P A Limbach; P F Crain; J A McCloskey
Journal:  Nucleic Acids Res       Date:  1994-06-25       Impact factor: 16.971

3.  The isolation from ribonucleic acid of substituted uridines containing alpha-aminobutyrate moieties derived from methionine.

Authors:  A G Saponara; M D Enger
Journal:  Biochim Biophys Acta       Date:  1974-04-27

Review 4.  tRNA-rRNA interactions and peptidyl transferase.

Authors:  H F Noller
Journal:  FASEB J       Date:  1993-01       Impact factor: 5.191

5.  Functional effects of a G to U base change at position 530 in a highly conserved loop of Escherichia coli 16S RNA.

Authors:  M Santer; U Santer; K Nurse; A Bakin; P Cunningham; M Zain; D O'Connell; J Ofengand
Journal:  Biochemistry       Date:  1993-06-01       Impact factor: 3.162

6.  A novel method for the determination of post-transcriptional modification in RNA by mass spectrometry.

Authors:  J A Kowalak; S C Pomerantz; P F Crain; J A McCloskey
Journal:  Nucleic Acids Res       Date:  1993-09-25       Impact factor: 16.971

Review 7.  The 530 loop of 16S rRNA: a signal to EF-Tu?

Authors:  T Powers; H F Noller
Journal:  Trends Genet       Date:  1994-01       Impact factor: 11.639

8.  Functional effects of base changes which further define the decoding center of Escherichia coli 16S ribosomal RNA: mutation of C1404, G1405, C1496, G1497, and U1498.

Authors:  P R Cunningham; K Nurse; C J Weitzmann; J Ofengand
Journal:  Biochemistry       Date:  1993-07-20       Impact factor: 3.162

9.  Four newly located pseudouridylate residues in Escherichia coli 23S ribosomal RNA are all at the peptidyltransferase center: analysis by the application of a new sequencing technique.

Authors:  A Bakin; J Ofengand
Journal:  Biochemistry       Date:  1993-09-21       Impact factor: 3.162

10.  5S rRNA modification in the hyperthermophilic archaea Sulfolobus solfataricus and Pyrodictium occultum.

Authors:  E Bruenger; J A Kowalak; Y Kuchino; J A McCloskey; H Mizushima; K O Stetter; P F Crain
Journal:  FASEB J       Date:  1993-01       Impact factor: 5.191
View more
  22 in total

1.  Identification of the mass-silent post-transcriptionally modified nucleoside pseudouridine in RNA by matrix-assisted laser desorption/ionization mass spectrometry.

Authors:  K G Patteson; L P Rodicio; P A Limbach
Journal:  Nucleic Acids Res       Date:  2001-05-15       Impact factor: 16.971

2.  Post-transcriptional modifications in the small subunit ribosomal RNA from Thermotoga maritima, including presence of a novel modified cytidine.

Authors:  Rebecca Guymon; Steven C Pomerantz; J Nicholas Ison; Pamela F Crain; James A McCloskey
Journal:  RNA       Date:  2007-01-25       Impact factor: 4.942

3.  Characterization of a Coxiella burnetii ftsZ mutant generated by Himar1 transposon mutagenesis.

Authors:  Paul A Beare; Dale Howe; Diane C Cockrell; Anders Omsland; Bryan Hansen; Robert A Heinzen
Journal:  J Bacteriol       Date:  2008-12-29       Impact factor: 3.490

4.  Pseudouridine synthases: four families of enzymes containing a putative uridine-binding motif also conserved in dUTPases and dCTP deaminases.

Authors:  E V Koonin
Journal:  Nucleic Acids Res       Date:  1996-06-15       Impact factor: 16.971

5.  Posttranscriptional modifications in 16S and 23S rRNAs of the archaeal hyperthermophile Sulfolobus solfataricus.

Authors:  K R Noon; E Bruenger; J A McCloskey
Journal:  J Bacteriol       Date:  1998-06       Impact factor: 3.490

Review 6.  Eukaryotic ribosomal RNA: the recent excitement in the nucleotide modification problem.

Authors:  B E Maden; J M Hughes
Journal:  Chromosoma       Date:  1997-06       Impact factor: 4.316

7.  Identification and site of action of the remaining four putative pseudouridine synthases in Escherichia coli.

Authors:  M Del Campo; Y Kaya; J Ofengand
Journal:  RNA       Date:  2001-11       Impact factor: 4.942

8.  Mapping of the 13 pseudouridine residues in Saccharomyces cerevisiae small subunit ribosomal RNA to nucleotide resolution.

Authors:  A Bakin; J Ofengand
Journal:  Nucleic Acids Res       Date:  1995-08-25       Impact factor: 16.971

Review 9.  Insights into the biology of Escherichia coli through structural proteomics.

Authors:  Allan Matte; Zongchao Jia; S Sunita; J Sivaraman; Miroslaw Cygler
Journal:  J Struct Funct Genomics       Date:  2007-08-01

10.  Structure of the pseudouridine synthase RsuA from Haemophilus influenzae.

Authors:  Allan Matte; Gordon V Louie; J Sivaraman; Miroslaw Cygler; Stephen K Burley
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2005-03-12
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.