Literature DB >> 7518580

Summary: the modified nucleosides of RNA.

P A Limbach1, P F Crain, J A McCloskey.   

Abstract

A comprehensive listing is made of posttranscriptionally modified nucleosides from RNA reported in the literature through mid-1994. Included are chemical structures, common names, symbols, Chemical Abstracts registry numbers (for ribonucleoside and corresponding base), Chemical Abstracts Index Name, phylogenetic sources, and initial literature citations for structural characterization or occurrence, and for chemical synthesis. The listing is categorized by type of RNA: tRNA, rRNA, mRNA, snRNA, and other RNAs. A total of 93 different modified nucleosides have been reported in RNA, with the largest number and greatest structural diversity in tRNA, 79; and 28 in rRNA, 12 in mRNA, 11 in snRNA and 3 in other small RNAs.

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Year:  1994        PMID： 7518580      PMCID： PMC523672          DOI： 10.1093/nar/22.12.2183

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  159 in total

1.  THE DIRECT PREPARATION OF 2'-O-METHYLADENOSINE FROM ADENOSINE.

Authors:  A D BROOM; R K ROBINS
Journal:  J Am Chem Soc       Date:  1965-03-05       Impact factor: 15.419

2.  Structural analysis of O2'-methyl-5-carbamoylmethyluridine, a newly discovered constituent of yeast transfer RNA.

Authors:  M W Gray
Journal:  Biochemistry       Date:  1976-07-13       Impact factor: 3.162

3.  The isolation from ribonucleic acid of substituted uridines containing alpha-aminobutyrate moieties derived from methionine.

Authors:  A G Saponara; M D Enger
Journal:  Biochim Biophys Acta       Date:  1974-04-27

4.  Structure determination of a nucleoside Q precursor isolated from E. coli tRNA: 7-(aminomethyl)-7-deazaguanosine.

Authors:  N Okada; S Noguchi; S Nishimura; T Ohgi; T Goto; P F Crain; J A McCloskey
Journal:  Nucleic Acids Res       Date:  1978-07       Impact factor: 16.971

5.  Sequences containing methylated nucleotides at the 5' termini of messenger RNAs: possible implications for processing.

Authors:  F Rottman; A J Shatkin; R P Perry
Journal:  Cell       Date:  1974-11       Impact factor: 41.582

6.  Nucleotide sequences from specific areas of the 16S and 23S ribosomal RNAs of E. coli.

Authors:  P Fellner
Journal:  Eur J Biochem       Date:  1969-11

7.  5-carboxymethyluridine, a novel nucleoside derived from yeast and wheat embryo transfer ribonucleates.

Authors:  M W Gray; B G Lane
Journal:  Biochemistry       Date:  1968-10       Impact factor: 3.162

8.  2-Methylthio N6-(delta 2-isopentenyl) adenosine: a component of E. coli tyrosine transfer RNA.

Authors:  F Harada; H J Gross; F Kimura; S H Chang; S Nishimura; U L RajBhandary
Journal:  Biochem Biophys Res Commun       Date:  1968-10-24       Impact factor: 3.575

9.  Cytokinin from soluble RNA of Escherichia coli: 6-(3-methyl-2-butenylamino)-2-methylthio-9-beta-D-ribofuranosylpurine.

Authors:  W J Burrows; D J Armstrong; F Skoog; S M Hecht; J T Boyle; N J Leonard; J Occolowitz
Journal:  Science       Date:  1968-08-16       Impact factor: 47.728

10.  Modification of mitochondrial ribosomal RNA from hamster cells: the presence of GmG and late-methylated UmGmU in the large subunit (17S) RNA.

Authors:  D T Dubin; R H Taylor
Journal:  J Mol Biol       Date:  1978-06-05       Impact factor: 5.469
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  173 in total

Review 1.  Some unusual nucleic acid bases are products of hydroxyl radical oxidation of DNA and RNA.

Authors:  J Barciszewski; M Z Barciszewska; G Siboska; S I Rattan; B F Clark
Journal:  Mol Biol Rep       Date:  1999-12       Impact factor: 2.316

Review 2.  Small nucleolar RNA-guided post-transcriptional modification of cellular RNAs.

Authors:  T Kiss
Journal:  EMBO J       Date:  2001-07-16       Impact factor: 11.598

3.  Comparative genomics and evolution of proteins involved in RNA metabolism.

Authors:  Vivek Anantharaman; Eugene V Koonin; L Aravind
Journal:  Nucleic Acids Res       Date:  2002-04-01       Impact factor: 16.971

4.  tRNomics: analysis of tRNA genes from 50 genomes of Eukarya, Archaea, and Bacteria reveals anticodon-sparing strategies and domain-specific features.

Authors:  Christian Marck; Henri Grosjean
Journal:  RNA       Date:  2002-10       Impact factor: 4.942

5.  Identification of the mass-silent post-transcriptionally modified nucleoside pseudouridine in RNA by matrix-assisted laser desorption/ionization mass spectrometry.

Authors:  K G Patteson; L P Rodicio; P A Limbach
Journal:  Nucleic Acids Res       Date:  2001-05-15       Impact factor: 16.971

6.  RNAML: a standard syntax for exchanging RNA information.

Authors:  Allison Waugh; Patrick Gendron; Russ Altman; James W Brown; David Case; Daniel Gautheret; Stephen C Harvey; Neocles Leontis; John Westbrook; Eric Westhof; Michael Zuker; François Major
Journal:  RNA       Date:  2002-06       Impact factor: 4.942

7.  RNA ligation and the origin of tRNA.

Authors:  Uma Nagaswamy; George E Fox
Journal:  Orig Life Evol Biosph       Date:  2003-04       Impact factor: 1.950

8.  Mass spectrometry-based quantification of pseudouridine in RNA.

Authors:  Balasubrahmanyam Addepalli; Patrick A Limbach
Journal:  J Am Soc Mass Spectrom       Date:  2011-05-03       Impact factor: 3.109

9.  Exoribonuclease R in Mycoplasma genitalium can carry out both RNA processing and degradative functions and is sensitive to RNA ribose methylation.

Authors:  Maureen S Lalonde; Yuhong Zuo; Jianwei Zhang; Xin Gong; Shaohui Wu; Arun Malhotra; Zhongwei Li
Journal:  RNA       Date:  2007-09-13       Impact factor: 4.942

10.  1-Methylguanosine deficiency of tRNA influences cognate codon interaction and metabolism in Salmonella typhimurium.

Authors:  J N Li; G R Björk
Journal:  J Bacteriol       Date:  1995-11       Impact factor: 3.490
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