Literature DB >> 8598204

Editing of the GLuR-B ion channel RNA in vitro by recombinant double-stranded RNA adenosine deaminase.

G A Dabiri1, F Lai, R A Drakas, K Nishikura.   

Abstract

Double-stranded RNA (dsRNA)-specific adenosine deaminase (DRADA) has been implicated as an enzyme responsible for the editing of RNA transcripts encoding glutamate-gated ion channel subunits (GLuR) in brain. In one case, the editing alters the gene-encoded glutamine (Q) to an arginine (R) located within the channel-forming domain of the alpha-amino-3-hydroxy-5-methyl-isoxazole-4-propionic acid (AMPA) receptor subunit GLuR-B. The result of editing at this site, called the 'Q/R' site, is a profound alteration of the Ca2+ permeability of the GLuR channel. Using recombinantly expressed DRADA proteins, we now demonstrate in vitro that DRADA is indeed involved in editing of the GLuR-B RNA. In addition to the formation of an RNA duplex structure involving exon and intron sequences, Q/R site-selective editing by DRADA also requires a cofactor protein(s) commonly present even in non-neuronal cells. The accuracy and efficiency of this RNA editing system appear to be determined by the quantitative balance between DRADA, cofactor and substrate GLuR-B RNA.

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Year:  1996        PMID: 8598204      PMCID: PMC449915     

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  37 in total

1.  Developmental regulation of covalent modification of double-stranded RNA during silkmoth oogenesis.

Authors:  Y A Skeiky; K Iatrou
Journal:  J Mol Biol       Date:  1991-04-05       Impact factor: 5.469

2.  Ca2+ permeability of KA-AMPA--gated glutamate receptor channels depends on subunit composition.

Authors:  M Hollmann; M Hartley; S Heinemann
Journal:  Science       Date:  1991-05-10       Impact factor: 47.728

3.  Structural determinants of ion flow through recombinant glutamate receptor channels.

Authors:  T A Verdoorn; N Burnashev; H Monyer; P H Seeburg; B Sakmann
Journal:  Science       Date:  1991-06-21       Impact factor: 47.728

4.  RNA editing in brain controls a determinant of ion flow in glutamate-gated channels.

Authors:  B Sommer; M Köhler; R Sprengel; P H Seeburg
Journal:  Cell       Date:  1991-10-04       Impact factor: 41.582

5.  Double-stranded RNA unwinding and modifying activity is detected ubiquitously in primary tissues and cell lines.

Authors:  R W Wagner; C Yoo; L Wrabetz; J Kamholz; J Buchhalter; N F Hassan; K Khalili; S U Kim; B Perussia; F A McMorris
Journal:  Mol Cell Biol       Date:  1990-10       Impact factor: 4.272

6.  A double-stranded RNA unwinding activity introduces structural alterations by means of adenosine to inosine conversions in mammalian cells and Xenopus eggs.

Authors:  R W Wagner; J E Smith; B S Cooperman; K Nishikura
Journal:  Proc Natl Acad Sci U S A       Date:  1989-04       Impact factor: 11.205

7.  Evolutionary origins of apoB mRNA editing: catalysis by a cytidine deaminase that has acquired a novel RNA-binding motif at its active site.

Authors:  N Navaratnam; S Bhattacharya; T Fujino; D Patel; A L Jarmuz; J Scott
Journal:  Cell       Date:  1995-04-21       Impact factor: 41.582

8.  Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei.

Authors:  J D Dignam; R M Lebovitz; R G Roeder
Journal:  Nucleic Acids Res       Date:  1983-03-11       Impact factor: 16.971

9.  In vitro apolipoprotein B mRNA editing: identification of a 27S editing complex.

Authors:  H C Smith; S R Kuo; J W Backus; S G Harris; C E Sparks; J D Sparks
Journal:  Proc Natl Acad Sci U S A       Date:  1991-02-15       Impact factor: 11.205

10.  Substrate specificity of the dsRNA unwinding/modifying activity.

Authors:  K Nishikura; C Yoo; U Kim; J M Murray; P A Estes; F E Cash; S A Liebhaber
Journal:  EMBO J       Date:  1991-11       Impact factor: 11.598

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  33 in total

1.  A third member of the RNA-specific adenosine deaminase gene family, ADAR3, contains both single- and double-stranded RNA binding domains.

Authors:  C X Chen; D S Cho; Q Wang; F Lai; K C Carter; K Nishikura
Journal:  RNA       Date:  2000-05       Impact factor: 4.942

2.  Evidence that RNA editing modulates splice site selection in the 5-HT2C receptor gene.

Authors:  Rachel Flomen; Joanne Knight; Pak Sham; Robert Kerwin; Andrew Makoff
Journal:  Nucleic Acids Res       Date:  2004-04-15       Impact factor: 16.971

3.  Chromosomal storage of the RNA-editing enzyme ADAR1 in Xenopus oocytes.

Authors:  Nina B Sallacz; Michael F Jantsch
Journal:  Mol Biol Cell       Date:  2005-04-20       Impact factor: 4.138

4.  Extensive adenosine-to-inosine editing detected in Alu repeats of antisense RNAs reveals scarcity of sense-antisense duplex formation.

Authors:  Yukio Kawahara; Kazuko Nishikura
Journal:  FEBS Lett       Date:  2006-03-24       Impact factor: 4.124

5.  An accurate fluorescent assay for quantifying the extent of RNA editing.

Authors:  Loretta M Roberson; Joshua J C Rosenthal
Journal:  RNA       Date:  2006-09-06       Impact factor: 4.942

6.  Modulation of microRNA processing and expression through RNA editing by ADAR deaminases.

Authors:  Weidong Yang; Thimmaiah P Chendrimada; Qingde Wang; Miyoko Higuchi; Peter H Seeburg; Ramin Shiekhattar; Kazuko Nishikura
Journal:  Nat Struct Mol Biol       Date:  2005-12-20       Impact factor: 15.369

7.  Substitution of the use of radioactivity by fluorescence for biochemical studies of RNA.

Authors:  Bei-Wen Ying; Dominique Fourmy; Satoko Yoshizawa
Journal:  RNA       Date:  2007-09-11       Impact factor: 4.942

8.  RNA-Seq analysis identifies a novel set of editing substrates for human ADAR2 present in Saccharomyces cerevisiae.

Authors:  Tristan Eifler; Subhash Pokharel; Peter A Beal
Journal:  Biochemistry       Date:  2013-10-31       Impact factor: 3.162

9.  CRM1 mediates the export of ADAR1 through a nuclear export signal within the Z-DNA binding domain.

Authors:  H Poulsen; J Nilsson; C K Damgaard; J Egebjerg; J Kjems
Journal:  Mol Cell Biol       Date:  2001-11       Impact factor: 4.272

10.  Tad1p, a yeast tRNA-specific adenosine deaminase, is related to the mammalian pre-mRNA editing enzymes ADAR1 and ADAR2.

Authors:  A Gerber; H Grosjean; T Melcher; W Keller
Journal:  EMBO J       Date:  1998-08-17       Impact factor: 11.598

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