Literature DB >> 2704740

A double-stranded RNA unwinding activity introduces structural alterations by means of adenosine to inosine conversions in mammalian cells and Xenopus eggs.

R W Wagner1, J E Smith, B S Cooperman, K Nishikura.   

Abstract

Amphibian eggs and embryos as well as mammalian cells have been reported to contain an activity that unwinds double-stranded RNA. We have now found that adenosine residues have been modified in the RNA products of this unwinding activity. Although the modified RNA remains double-stranded, the modification causes the RNA to be susceptible to single-strand-specific RNase and to migrate as a retarded smear on a native polyacrylamide electrophoresis gel. The modification is specific for double-stranded RNA. At least 40% of the adenosine residues can be modified in vitro in a given random sequence RNA molecule. By using standard two-dimensional TLC and HPLC analyses, the modified base has been identified as inosine. Mismatched base-pairing between inosine and uridine appears to be responsible for the observed characteristics of the unwound RNA. The biological significance of this modifying activity and also of the modified double-stranded RNA is discussed.

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Year:  1989        PMID: 2704740      PMCID: PMC286974          DOI: 10.1073/pnas.86.8.2647

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  23 in total

1.  Cell cycle expression of RNA duplex unwindase activity in mammalian cells.

Authors:  R W Wagner; K Nishikura
Journal:  Mol Cell Biol       Date:  1988-02       Impact factor: 4.272

2.  An unwinding activity that covalently modifies its double-stranded RNA substrate.

Authors:  B L Bass; H Weintraub
Journal:  Cell       Date:  1988-12-23       Impact factor: 41.582

Review 3.  Minor components in transfer RNA: their characterization, location, and function.

Authors:  S Nishimura
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4.  Sequencing end-labeled DNA with base-specific chemical cleavages.

Authors:  A M Maxam; W Gilbert
Journal:  Methods Enzymol       Date:  1980       Impact factor: 1.600

5.  DNA-dependent transcription of adenovirus genes in a soluble whole-cell extract.

Authors:  J L Manley; A Fire; A Cano; P A Sharp; M L Gefter
Journal:  Proc Natl Acad Sci U S A       Date:  1980-07       Impact factor: 11.205

6.  A novel form of tissue-specific RNA processing produces apolipoprotein-B48 in intestine.

Authors:  L M Powell; S C Wallis; R J Pease; Y H Edwards; T J Knott; J Scott
Journal:  Cell       Date:  1987-09-11       Impact factor: 41.582

7.  Apolipoprotein B-48 is the product of a messenger RNA with an organ-specific in-frame stop codon.

Authors:  S H Chen; G Habib; C Y Yang; Z W Gu; B R Lee; S A Weng; S R Silberman; S J Cai; J P Deslypere; M Rosseneu
Journal:  Science       Date:  1987-10-16       Impact factor: 47.728

8.  Extensive editing of the cytochrome c oxidase III transcript in Trypanosoma brucei.

Authors:  J E Feagin; J M Abraham; K Stuart
Journal:  Cell       Date:  1988-05-06       Impact factor: 41.582

9.  Editing of kinetoplastid mitochondrial mRNAs by uridine addition and deletion generates conserved amino acid sequences and AUG initiation codons.

Authors:  J M Shaw; J E Feagin; K Stuart; L Simpson
Journal:  Cell       Date:  1988-05-06       Impact factor: 41.582

10.  Biased hypermutation and other genetic changes in defective measles viruses in human brain infections.

Authors:  R Cattaneo; A Schmid; D Eschle; K Baczko; V ter Meulen; M A Billeter
Journal:  Cell       Date:  1988-10-21       Impact factor: 41.582

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  124 in total

1.  Chimeric double-stranded RNA-specific adenosine deaminase ADAR1 proteins reveal functional selectivity of double-stranded RNA-binding domains from ADAR1 and protein kinase PKR.

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Journal:  Proc Natl Acad Sci U S A       Date:  2000-11-07       Impact factor: 11.205

Review 2.  RNA editing by adenosine deaminases that act on RNA.

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Review 3.  RNA degradation and models for post-transcriptional gene-silencing.

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Journal:  Plant Mol Biol       Date:  2000-06       Impact factor: 4.076

4.  RNA editing and regulation of Drosophila 4f-rnp expression by sas-10 antisense readthrough mRNA transcripts.

Authors:  Nick T Peters; Justin A Rohrbach; Brian A Zalewski; Colleen M Byrkett; Jack C Vaughn
Journal:  RNA       Date:  2003-06       Impact factor: 4.942

5.  Extra double-stranded RNA binding domain (dsRBD) in a squid RNA editing enzyme confers resistance to high salt environment.

Authors:  Juan Pablo Palavicini; Rodrigo A Correa-Rojas; Joshua J C Rosenthal
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Review 6.  Substitutional A-to-I RNA editing.

Authors:  Bjorn-Erik Wulff; Kazuko Nishikura
Journal:  Wiley Interdiscip Rev RNA       Date:  2010 Jul-Aug       Impact factor: 9.957

Review 7.  Adenosine deaminases acting on RNA, RNA editing, and interferon action.

Authors:  Cyril X George; Zhenji Gan; Yong Liu; Charles E Samuel
Journal:  J Interferon Cytokine Res       Date:  2010-12-23       Impact factor: 2.607

8.  ADAR1 RNA deaminase limits short interfering RNA efficacy in mammalian cells.

Authors:  Weidong Yang; Qingde Wang; Kelly L Howell; Joshua T Lee; Dan-Sung C Cho; John M Murray; Kazuko Nishikura
Journal:  J Biol Chem       Date:  2004-11-19       Impact factor: 5.157

9.  Extensive adenosine-to-inosine editing detected in Alu repeats of antisense RNAs reveals scarcity of sense-antisense duplex formation.

Authors:  Yukio Kawahara; Kazuko Nishikura
Journal:  FEBS Lett       Date:  2006-03-24       Impact factor: 4.124

10.  Regulation of a double-stranded RNA modification activity in human cells.

Authors:  L M Morrissey; K Kirkegaard
Journal:  Mol Cell Biol       Date:  1991-07       Impact factor: 4.272

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