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Literature DB >> 9399829

Database on the structure of small ribosomal subunit RNA.

Y Van de Peer¹, A Caers, P De Rijk, R De Wachter.

Abstract

About 8600 complete or nearly complete sequences are now available from the Antwerp database on small ribosomal subunit RNA. All these sequences are aligned with one another on the basis of the adopted secondary structure model, which is corroborated by the observation of compensating substitutions in the alignment. Literature references, accession numbers and detailed taxonomic information are also compiled. The database can be consulted via the World Wide Web at URL http://rrna.uia.ac.be/ssu/

Mesh：

Substances：
RNA, Ribosomal

Year: 1998 PMID： 9399829 PMCID： PMC147221

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

15 in total

Review 1. Bacterial evolution.

Authors: C R Woese
Journal: Microbiol Rev Date: 1987-06

2. A quantitative map of nucleotide substitution rates in bacterial rRNA.

Authors: Y Van de Peer; S Chapelle; R De Wachter
Journal: Nucleic Acids Res Date: 1996-09-01 Impact factor: 16.971

3. The EMBL nucleotide sequence database.

Authors: G Stoesser; M A Moseley; J Sleep; M McGowran; M Garcia-Pastor; P Sterk
Journal: Nucleic Acids Res Date: 1998-01-01 Impact factor: 16.971

4. The evolution of stramenopiles and alveolates as derived by "substitution rate calibration" of small ribosomal subunit RNA.

Authors: Y Van de Peer; G Van der Auwera; R De Wachter
Journal: J Mol Evol Date: 1996-02 Impact factor: 2.395

5. Phylogenetic analysis of slippage-like sequence variation in the V4 rRNA expansion segment in tiger beetles (Cicindelidae).

Authors: A P Vogler; A Welsh; J M Hancock
Journal: Mol Biol Evol Date: 1997-01 Impact factor: 16.240

6. Database on the structure of small ribosomal subunit RNA.

Authors: Y Van de Peer; J Jansen; P De Rijk; R De Wachter
Journal: Nucleic Acids Res Date: 1997-01-01 Impact factor: 16.971

Review 7. The winds of (evolutionary) change: breathing new life into microbiology.

Authors: G J Olsen; C R Woese; R Overbeek
Journal: J Bacteriol Date: 1994-01 Impact factor: 3.490

8. Database on the structure of small ribosomal subunit RNA.

Authors: Y Van de Peer; S Nicolaï; P De Rijk; R De Wachter
Journal: Nucleic Acids Res Date: 1996-01-01 Impact factor: 16.971

9. Compilation of small ribosomal subunit RNA structures.

Authors: J M Neefs; Y Van de Peer; P De Rijk; S Chapelle; R De Wachter
Journal: Nucleic Acids Res Date: 1993-07-01 Impact factor: 16.971

10. Substitution rate calibration of small subunit ribosomal RNA identifies chlorarachniophyte endosymbionts as remnants of green algae.

Authors: Y Van de Peer; S A Rensing; U G Maier; R De Wachter
Journal: Proc Natl Acad Sci U S A Date: 1996-07-23 Impact factor: 11.205

16 in total

1. RNA sequence evolution with secondary structure constraints: comparison of substitution rate models using maximum-likelihood methods.

Authors: N J Savill; D C Hoyle; P G Higgs
Journal: Genetics Date: 2001-01 Impact factor: 4.562

2. Comparative sequence analysis and patterns of covariation in RNA secondary structures.

Authors: J Parsch; J M Braverman; W Stephan
Journal: Genetics Date: 2000-02 Impact factor: 4.562

3. The evolution of soil-burrowing cockroaches (Blattaria: Blaberidae) from wood-burrowing ancestors following an invasion of the latter from Asia into Australia.

Authors: Kiyoto Maekawa; Nathan Lo; Harley A Rose; Tadao Matsumoto
Journal: Proc Biol Sci Date: 2003-06-22 Impact factor: 5.349

4. Mitogenomic evolution and interrelationships of the Cypriniformes (Actinopterygii: Ostariophysi): the first evidence toward resolution of higher-level relationships of the world's largest freshwater fish clade based on 59 whole mitogenome sequences.

Authors: K Saitoh; T Sado; R L Mayden; N Hanzawa; K Nakamura; M Nishida; M Miya
Journal: J Mol Evol Date: 2006-11-02 Impact factor: 2.395

5. Degradation of 1,2-dibromoethane by Mycobacterium sp. strain GP1.

Authors: G J Poelarends; J E van Hylckama Vlieg; J R Marchesi; L M Freitas Dos Santos; D B Janssen
Journal: J Bacteriol Date: 1999-04 Impact factor: 3.490

6. Expression, purification, and crystallography of the conserved methionine-rich domain of human signal recognition particle 54 kDa protein.

Authors: K Gowda; W M Clemons; C Zwieb; S D Black
Journal: Protein Sci Date: 1999-05 Impact factor: 6.725

7. Heteroduplex mobility assay-guided sequence discovery: elucidation of the small subunit (18S) rDNA sequences of Pfiesteria piscicida and related dinoflagellates from complex algal culture and environmental sample DNA pools.

Authors: D W Oldach; C F Delwiche; K S Jakobsen; T Tengs; E G Brown; J W Kempton; E F Schaefer; H A Bowers; H B Glasgow; J M Burkholder; K A Steidinger; P A Rublee
Journal: Proc Natl Acad Sci U S A Date: 2000-04-11 Impact factor: 11.205

8. Starch division and partitioning. A mechanism for granule propagation and maintenance in the picophytoplanktonic green alga Ostreococcus tauri.

Authors: Jean-Philippe Ral; Evelyne Derelle; Conchita Ferraz; Fabrice Wattebled; Benoit Farinas; Florence Corellou; Alain Buléon; Marie-Christine Slomianny; David Delvalle; Christophe d'Hulst; Stephane Rombauts; Hervé Moreau; Steven Ball
Journal: Plant Physiol Date: 2004-09-24 Impact factor: 8.340

9. Flow cytometric analysis of the in situ accessibility of Escherichia coli 16S rRNA for fluorescently labeled oligonucleotide probes.

Authors: B M Fuchs; G Wallner; W Beisker; I Schwippl; W Ludwig; R Amann
Journal: Appl Environ Microbiol Date: 1998-12 Impact factor: 4.792

10. The complete mitochondrial genome of the citrus red mite Panonychus citri (Acari: Tetranychidae): high genome rearrangement and extremely truncated tRNAs.

Authors: Ming-Long Yuan; Dan-Dan Wei; Bao-Jun Wang; Wei Dou; Jin-Jun Wang
Journal: BMC Genomics Date: 2010-10-23 Impact factor: 3.969