Literature DB >> 8594608

The Ribosomal Database Project (RDP).

B L Maidak1, G J Olsen, N Larsen, R Overbeek, M J McCaughey, C R Woese.   

Abstract

The Ribosomal Database Project (RDP) is a curated database that offers ribosome-related data, analysis services and associated computer programs. The offerings include phylogenetically ordered alignments of ribosomal RNA (rRNA) sequences, derived phylogenetic trees, rRNA secondary structure diagrams and various software for handling, analyzing and displaying alignments and trees. The data are available via anonymous ftp (rdp.life.uiuc.edu), electronic mail (server@rdp.life.uiuc.edu), gopher (rdpgopher.life.uiuc.edu) and World Wide Web (WWW)(http://rdpwww.life.uiuc.edu/). The electronic mail and WWW servers provide ribosomal probe checking, screening for possible chimeric rRNA sequences, automated alignment and approximate phylogenetic placement of user-submitted sequences on an existing phylogenetic tree.

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Year:  1996        PMID: 8594608      PMCID: PMC145599          DOI: 10.1093/nar/24.1.82

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  5 in total

1.  fastDNAmL: a tool for construction of phylogenetic trees of DNA sequences using maximum likelihood.

Authors:  G J Olsen; H Matsuda; R Hagstrom; R Overbeek
Journal:  Comput Appl Biosci       Date:  1994-02

2.  The European Bioinformatics Institute (EBI) databases.

Authors:  D B Emmert; P J Stoehr; G Stoesser; G N Cameron
Journal:  Nucleic Acids Res       Date:  1994-09       Impact factor: 16.971

3.  GenBank.

Authors:  D A Benson; M Boguski; D J Lipman; J Ostell
Journal:  Nucleic Acids Res       Date:  1994-09       Impact factor: 16.971

4.  Evolutionary trees from DNA sequences: a maximum likelihood approach.

Authors:  J Felsenstein
Journal:  J Mol Evol       Date:  1981       Impact factor: 2.395

5.  The Ribosomal Database Project.

Authors:  B L Maidak; N Larsen; M J McCaughey; R Overbeek; G J Olsen; K Fogel; J Blandy; C R Woese
Journal:  Nucleic Acids Res       Date:  1994-09       Impact factor: 16.971

  5 in total
  119 in total

1.  High bacterial diversity in permanently cold marine sediments.

Authors:  K Ravenschlag; K Sahm; J Pernthaler; R Amann
Journal:  Appl Environ Microbiol       Date:  1999-09       Impact factor: 4.792

Review 2.  Origin and evolution of the mitochondrial proteome.

Authors:  C G Kurland; S G Andersson
Journal:  Microbiol Mol Biol Rev       Date:  2000-12       Impact factor: 11.056

3.  High-density microarray of small-subunit ribosomal DNA probes.

Authors:  Kenneth H Wilson; Wendy J Wilson; Jennifer L Radosevich; Todd Z DeSantis; Vijay S Viswanathan; Thomas A Kuczmarski; Gary L Andersen
Journal:  Appl Environ Microbiol       Date:  2002-05       Impact factor: 4.792

4.  16S ribosomal DNA sequence analysis of a large collection of environmental and clinical unidentifiable bacterial isolates.

Authors:  M Drancourt; C Bollet; A Carlioz; R Martelin; J P Gayral; D Raoult
Journal:  J Clin Microbiol       Date:  2000-10       Impact factor: 5.948

5.  Niche-partitioning of Prochlorococcus populations in a stratified water column in the eastern North Atlantic Ocean.

Authors:  N J West; D J Scanlan
Journal:  Appl Environ Microbiol       Date:  1999-06       Impact factor: 4.792

6.  Identification of Arthrobacter oxydans, Arthrobacter luteolus sp. nov., and Arthrobacter albus sp. nov., isolated from human clinical specimens.

Authors:  G Wauters; J Charlier; M Janssens; M Delmée
Journal:  J Clin Microbiol       Date:  2000-06       Impact factor: 5.948

7.  Bacterial diversity in Malan ice core from the Tibetan Plateau.

Authors:  S R Xiang; T D Yao; L Z An; B Q Xu; Z Li; G J Wu; Y Q Wang; S Ma; X R Chen
Journal:  Folia Microbiol (Praha)       Date:  2004       Impact factor: 2.099

8.  Identification of a novel group of bacteria in sludge from a deteriorated biological phosphorus removal reactor.

Authors:  A T Nielsen; W T Liu; C Filipe; L Grady; S Molin; D A Stahl
Journal:  Appl Environ Microbiol       Date:  1999-03       Impact factor: 4.792

9.  Rumen methanogenic genotypes differ in abundance according to host residual feed intake phenotype and diet type.

Authors:  Ciara A Carberry; Sinéad M Waters; Sinead M Waters; David A Kenny; Christopher J Creevey
Journal:  Appl Environ Microbiol       Date:  2013-11-08       Impact factor: 4.792

10.  Intraspecific variation of unusual phospholipids from Corynebacterium spp. containing a novel fatty acid.

Authors:  T Niepel; H Meyer; V Wray; W R Abraham
Journal:  J Bacteriol       Date:  1998-09       Impact factor: 3.490

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