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Literature DB >> 8594583

Codon usage tabulated from the international DNA sequence databases.

Y Nakamura¹, K Wada, Y Wada, H Doi, S Kanaya, T Gojobori, T Ikemura.

Abstract

Codon usage in 87 602 genes has been calculated using the nucleotide sequence data obtained from the GenBank Genetic Sequence Data Bank (Release 90.0; September 1995). The database is called the CUTG Database; the complete form of the database can be obtained by anonymous ftp from DDBJ and a part of the database, which lists the frequency of codon use in each organism, is made searchable through our World Wide Web server.

Mesh：

Substances：
Codon

Year: 1996 PMID： 8594583 PMCID： PMC145571 DOI： 10.1093/nar/24.1.214

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

7 in total

1. Codon usage tabulated from the GenBank genetic sequence data.

Authors: K Wada; Y Wada; H Doi; F Ishibashi; T Gojobori; T Ikemura
Journal: Nucleic Acids Res Date: 1991-04-25 Impact factor: 16.971

2. Codon usage tabulated from the GenBank genetic sequence data.

Authors: K Wada; Y Wada; F Ishibashi; T Gojobori; T Ikemura
Journal: Nucleic Acids Res Date: 1992-05-11 Impact factor: 16.971

3. Codon usage tabulated from the GenBank Genetic Sequence Data.

Authors: S Aota; T Gojobori; F Ishibashi; T Maruyama; T Ikemura
Journal: Nucleic Acids Res Date: 1988 Impact factor: 16.971

4. Codon usage tabulated from the GenBank genetic sequence data.

Authors: K Wada; S Aota; R Tsuchiya; F Ishibashi; T Gojobori; T Ikemura
Journal: Nucleic Acids Res Date: 1990-04-25 Impact factor: 16.971

5. Diversity in G + C content at the third position of codons in vertebrate genes and its cause.

Authors: S Aota; T Ikemura
Journal: Nucleic Acids Res Date: 1986-08-26 Impact factor: 16.971

6. Codon usage tabulated from the GenBank genetic sequence data.

Authors: T Maruyama; T Gojobori; S Aota; T Ikemura
Journal: Nucleic Acids Res Date: 1986 Impact factor: 16.971

Review 7. Codon usage and tRNA content in unicellular and multicellular organisms.

Authors: T Ikemura
Journal: Mol Biol Evol Date: 1985-01 Impact factor: 16.240

7 in total

12 in total

1. "Word" preference in the genomic text and genome evolution: different modes of n-tuplet usage in coding and noncoding sequences.

Authors: Christoforos Nikolaou; Yannis Almirantis
Journal: J Mol Evol Date: 2005-07-19 Impact factor: 2.395

10. Efficient developmental mis-targeting by the sporamin NTPP vacuolar signal to plastids in young leaves of sugarcane and Arabidopsis.

Authors: Annathurai Gnanasambandam; Robert G Birch
Journal: Plant Cell Rep Date: 2004-09-15 Impact factor: 4.570

Codon usage tabulated from the international DNA sequence databases.

1. Codon usage tabulated from the GenBank genetic sequence data.

2. Codon usage tabulated from the GenBank genetic sequence data.

3. Codon usage tabulated from the GenBank Genetic Sequence Data.

4. Codon usage tabulated from the GenBank genetic sequence data.

5. Diversity in G + C content at the third position of codons in vertebrate genes and its cause.

6. Codon usage tabulated from the GenBank genetic sequence data.

Review 7. Codon usage and tRNA content in unicellular and multicellular organisms.

1. "Word" preference in the genomic text and genome evolution: different modes of n-tuplet usage in coding and noncoding sequences.

2. rRNA complementarity within mRNAs: a possible basis for mRNA-ribosome interactions and translational control.

3. DNA Data Bank of Japan in the age of information biology.

4. Codon usage tabulated from the international DNA sequence databases.

5. Development of live-attenuated arenavirus vaccines based on codon deoptimization.

6. Development of live-attenuated arenavirus vaccines based on codon deoptimization of the viral glycoprotein.

7. Papillomavirus capsid protein expression level depends on the match between codon usage and tRNA availability.

8. Skipper, an LTR retrotransposon of Dictyostelium.

9. Neighboring-nucleotide effects on the rates of germ-line single-base-pair substitution in human genes.

10. Efficient developmental mis-targeting by the sporamin NTPP vacuolar signal to plastids in young leaves of sugarcane and Arabidopsis.