Literature DB >> 9016546

Codon usage tabulated from the international DNA sequence databases.

Y Nakamura1, T Gojobori, T Ikemura.   

Abstract

The codon usage in individual protein genes has been calculated using the nucleotide sequence obtained from the GenBank Genetic Sequence Database. Sum of the codon use of each organism has been also calculated. The data files can be obtained from anonymous ftp sites of DDBJ, DISC and EBI. The list of codon usage of genes in organisms was made searchable by name of organism through a web site. The compilation has been synchronized with a major release of GenBank.

Mesh:

Substances:

Year:  1997        PMID: 9016546      PMCID: PMC146397          DOI: 10.1093/nar/25.1.244

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  5 in total

1.  Codon usage tabulated from the GenBank genetic sequence data.

Authors:  K Wada; Y Wada; H Doi; F Ishibashi; T Gojobori; T Ikemura
Journal:  Nucleic Acids Res       Date:  1991-04-25       Impact factor: 16.971

2.  Codon usage tabulated from the GenBank genetic sequence data.

Authors:  K Wada; Y Wada; F Ishibashi; T Gojobori; T Ikemura
Journal:  Nucleic Acids Res       Date:  1992-05-11       Impact factor: 16.971

3.  Codon usage tabulated from the GenBank genetic sequence data.

Authors:  K Wada; S Aota; R Tsuchiya; F Ishibashi; T Gojobori; T Ikemura
Journal:  Nucleic Acids Res       Date:  1990-04-25       Impact factor: 16.971

4.  Codon usage tabulated from the international DNA sequence databases.

Authors:  Y Nakamura; K Wada; Y Wada; H Doi; S Kanaya; T Gojobori; T Ikemura
Journal:  Nucleic Acids Res       Date:  1996-01-01       Impact factor: 16.971

5.  GenBank.

Authors:  D A Benson; M Boguski; D J Lipman; J Ostell
Journal:  Nucleic Acids Res       Date:  1996-01-01       Impact factor: 16.971

  5 in total
  22 in total

1.  Retrotransposon BARE-1 and Its Role in Genome Evolution in the Genus Hordeum.

Authors: 
Journal:  Plant Cell       Date:  1999-09       Impact factor: 11.277

2.  Cytoplasmic dynein heavy chain 1b is required for flagellar assembly in Chlamydomonas.

Authors:  M E Porter; R Bower; J A Knott; P Byrd; W Dentler
Journal:  Mol Biol Cell       Date:  1999-03       Impact factor: 4.138

3.  Engineering Pseudochelin Production in Myxococcus xanthus.

Authors:  Juliane Korp; Lea Winand; Angela Sester; Markus Nett
Journal:  Appl Environ Microbiol       Date:  2018-10-30       Impact factor: 4.792

4.  Characterization of IS1515, a functional insertion sequence in Streptococcus pneumoniae.

Authors:  R Muñoz; R López; E García
Journal:  J Bacteriol       Date:  1998-03       Impact factor: 3.490

5.  Consensus-degenerate hybrid oligonucleotide primers for amplification of distantly related sequences.

Authors:  T M Rose; E R Schultz; J G Henikoff; S Pietrokovski; C M McCallum; S Henikoff
Journal:  Nucleic Acids Res       Date:  1998-04-01       Impact factor: 16.971

6.  Codon usage tabulated from the international DNA sequence databases.

Authors:  Y Nakamura; T Gojobori; T Ikemura
Journal:  Nucleic Acids Res       Date:  1998-01-01       Impact factor: 16.971

7.  Characterization of the hca cluster encoding the dioxygenolytic pathway for initial catabolism of 3-phenylpropionic acid in Escherichia coli K-12.

Authors:  E Díaz; A Ferrández; J L García
Journal:  J Bacteriol       Date:  1998-06       Impact factor: 3.490

8.  Expression of a plant protein by Neurospora crassa.

Authors:  S J Rasmussen-Wilson; J S Palas; V J Wolf; C S Taft; C P Selitrennikoff
Journal:  Appl Environ Microbiol       Date:  1997-09       Impact factor: 4.792

Review 9.  Biodegradation of aromatic compounds by Escherichia coli.

Authors:  E Díaz; A Ferrández; M A Prieto; J L García
Journal:  Microbiol Mol Biol Rev       Date:  2001-12       Impact factor: 11.056

10.  Amyrel, a paralogous gene of the amylase gene family in Drosophila melanogaster and the Sophophora subgenus.

Authors:  J L Da Lage; E Renard; F Chartois; F Lemeunier; M L Cariou
Journal:  Proc Natl Acad Sci U S A       Date:  1998-06-09       Impact factor: 11.205

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.