Literature DB >> 9016494

DNA Data Bank of Japan in the age of information biology.

Y Tateno1, T Gojobori.   

Abstract

DNA Data Bank of Japan (DDBJ) began its activities in 1986 in collaboration with EMBL in Europe and GenBank in the United States. DDBJ developed a data submission tool called Sakura, by which researchers can submit their newly sequenced data on WWW from every corner of the world. The data bank also built a database management system (Yamato II), incorporating the techniques and functions of the object-oriented database, in order to efficiently process the data it has collected. A number of research activities in information biology are also going on at DDBJ. Two such activities are also briefly introduced in this report.

Mesh：

Year:  1997        PMID： 9016494      PMCID： PMC146410          DOI： 10.1093/nar/25.1.14

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  10 in total

1.  Basic local alignment search tool.

Authors:  S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
Journal:  J Mol Biol       Date:  1990-10-05       Impact factor: 5.469

2.  Complementary DNA sequencing: expressed sequence tags and human genome project.

Authors:  M D Adams; J M Kelley; J D Gocayne; M Dubnick; M H Polymeropoulos; H Xiao; C R Merril; A Wu; B Olde; R F Moreno
Journal:  Science       Date:  1991-06-21       Impact factor: 47.728

3.  Rapid and sensitive protein similarity searches.

Authors:  D J Lipman; W R Pearson
Journal:  Science       Date:  1985-03-22       Impact factor: 47.728

4.  Unified approach to alignment and phylogenies.

Authors:  J Hein
Journal:  Methods Enzymol       Date:  1990       Impact factor: 1.600

5.  Improved tools for biological sequence comparison.

Authors:  W R Pearson; D J Lipman
Journal:  Proc Natl Acad Sci U S A       Date:  1988-04       Impact factor: 11.205

6.  The minimal gene complement of Mycoplasma genitalium.

Authors:  C M Fraser; J D Gocayne; O White; M D Adams; R A Clayton; R D Fleischmann; C J Bult; A R Kerlavage; G Sutton; J M Kelley; R D Fritchman; J F Weidman; K V Small; M Sandusky; J Fuhrmann; D Nguyen; T R Utterback; D M Saudek; C A Phillips; J M Merrick; J F Tomb; B A Dougherty; K F Bott; P C Hu; T S Lucier; S N Peterson; H O Smith; C A Hutchison; J C Venter
Journal:  Science       Date:  1995-10-20       Impact factor: 47.728

7.  Codon usage tabulated from the international DNA sequence databases.

Authors:  Y Nakamura; K Wada; Y Wada; H Doi; S Kanaya; T Gojobori; T Ikemura
Journal:  Nucleic Acids Res       Date:  1996-01-01       Impact factor: 16.971

8.  Identification of protein coding regions by database similarity search.

Authors:  W Gish; D J States
Journal:  Nat Genet       Date:  1993-03       Impact factor: 38.330

9.  CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.

Authors:  J D Thompson; D G Higgins; T J Gibson
Journal:  Nucleic Acids Res       Date:  1994-11-11       Impact factor: 16.971

10.  Whole-genome random sequencing and assembly of Haemophilus influenzae Rd.

Authors:  R D Fleischmann; M D Adams; O White; R A Clayton; E F Kirkness; A R Kerlavage; C J Bult; J F Tomb; B A Dougherty; J M Merrick
Journal:  Science       Date:  1995-07-28       Impact factor: 47.728
  10 in total
  2 in total

1.  DNA Data Bank of Japan (DDBJ) in XML.

Authors:  S Miyazaki; H Sugawara; T Gojobori; Y Tateno
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

2.  The epitope space of the human proteome.

Authors:  Lisa Berglund; Jorge Andrade; Jacob Odeberg; Mathias Uhlén
Journal:  Protein Sci       Date:  2008-04       Impact factor: 6.725
  2 in total

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