Literature DB >> 3748815

Diversity in G + C content at the third position of codons in vertebrate genes and its cause.

S Aota, T Ikemura.   

Abstract

Correlation was positive between the G + C content at the codon third position in genes of vertebrates and the G + C content of the genome portion surrounding each gene. Exons of genes with a high G + C% at the codon 3rd position are surrounded by G + C-rich introns and G + C-rich flanking sequences, and those with a low G + C% at the position by A + T-rich introns and flanking sequences. Analysis of G + C content distribution along DNA sequences using a DNA Sequence Data Bank supported the view that the vertebrate genome is a mosaic of regions with clear differences in their G + C content. The biological significance of the variation in G + C content throughout the vertebrate genome is discussed in connection with chromosomal banding.

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Year:  1986        PMID: 3748815      PMCID: PMC311650          DOI: 10.1093/nar/14.16.6345

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  23 in total

1.  Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes.

Authors:  T Ikemura
Journal:  J Mol Biol       Date:  1981-02-15       Impact factor: 5.469

2.  Correlation between the abundance of yeast transfer RNAs and the occurrence of the respective codons in protein genes. Differences in synonymous codon choice patterns of yeast and Escherichia coli with reference to the abundance of isoaccepting transfer RNAs.

Authors:  T Ikemura
Journal:  J Mol Biol       Date:  1982-07-15       Impact factor: 5.469

3.  Codon usage in bacteria: correlation with gene expressivity.

Authors:  M Gouy; C Gautier
Journal:  Nucleic Acids Res       Date:  1982-11-25       Impact factor: 16.971

4.  Nucleotide sequence of trpE of Salmonella typhimurium and its homology with the corresponding sequence of Escherichia coli.

Authors:  C Yanofsky; M vanCleemput
Journal:  J Mol Biol       Date:  1982-03-05       Impact factor: 5.469

5.  Nucleotide sequences of the trpG regions of Escherichia coli, Shigella dysenteriae, Salmonella typhimurium and Serratia marcescens.

Authors:  B P Nichols; G F Miozzari; M van Cleemput; G N Bennett; C Yanofsky
Journal:  J Mol Biol       Date:  1980-10-05       Impact factor: 5.469

Review 6.  Codon catalog usage and the genome hypothesis.

Authors:  R Grantham; C Gautier; M Gouy; R Mercier; A Pavé
Journal:  Nucleic Acids Res       Date:  1980-01-11       Impact factor: 16.971

7.  Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes: a proposal for a synonymous codon choice that is optimal for the E. coli translational system.

Authors:  T Ikemura
Journal:  J Mol Biol       Date:  1981-09-25       Impact factor: 5.469

8.  Codon selection in yeast.

Authors:  J L Bennetzen; B D Hall
Journal:  J Biol Chem       Date:  1982-03-25       Impact factor: 5.157

Review 9.  Preferential codon usage in prokaryotic genes: the optimal codon-anticodon interaction energy and the selective codon usage in efficiently expressed genes.

Authors:  H Grosjean; W Fiers
Journal:  Gene       Date:  1982-06       Impact factor: 3.688

10.  Comparison of the nucleoside sequence of trpA and sequences immediately beyond the trp operon of Klebsiella aerogenes. Salmonella typhimurium and Escherichia coli.

Authors:  B P Nichols; M Blumenberg; C Yanofsky
Journal:  Nucleic Acids Res       Date:  1981-04-10       Impact factor: 16.971

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  80 in total

Review 1.  Codon context.

Authors:  R H Buckingham
Journal:  Experientia       Date:  1990-12-01

2.  Codon usage tabulated from the GenBank genetic sequence data.

Authors:  K Wada; Y Wada; H Doi; F Ishibashi; T Gojobori; T Ikemura
Journal:  Nucleic Acids Res       Date:  1991-04-25       Impact factor: 16.971

3.  Sequence analysis suggests that tetra-nucleotides signal the termination of protein synthesis in eukaryotes.

Authors:  C M Brown; P A Stockwell; C N Trotman; W P Tate
Journal:  Nucleic Acids Res       Date:  1990-11-11       Impact factor: 16.971

Review 4.  Recent evidence for evolution of the genetic code.

Authors:  S Osawa; T H Jukes; K Watanabe; A Muto
Journal:  Microbiol Rev       Date:  1992-03

5.  Essential factors determining codon usage in ubiquitin genes.

Authors:  K Mita; S Ichimura; M Nenoi
Journal:  J Mol Evol       Date:  1991-09       Impact factor: 2.395

6.  Specific selection pressure at the third codon positions: contribution to 10- to 11-base periodicity in prokaryotic genomes.

Authors:  Amir B Cohanim; Edward N Trifonov; Yechezkel Kashi
Journal:  J Mol Evol       Date:  2006-07-28       Impact factor: 2.395

7.  Human chromosomal bands: nested structure, high-definition map and molecular basis.

Authors:  Maria Costantini; Oliver Clay; Concetta Federico; Salvatore Saccone; Fabio Auletta; Giorgio Bernardi
Journal:  Chromosoma       Date:  2006-10-28       Impact factor: 4.316

8.  Long range genome structure around the human alpha-globin complex analysed by PFGE.

Authors:  N Fischel-Ghodsian; R D Nicholls; D R Higgs
Journal:  Nucleic Acids Res       Date:  1987-08-11       Impact factor: 16.971

9.  Isolation and characterization of cDNA clones for Japanese quail (Coturnix japonica) major histocompatibility complex (MhcCoja) class I molecules.

Authors:  T Shiina; A Ando; T Imanishi; H Kawata; K Hanzawa; T Gojobori; H Inoko; S Watanabe
Journal:  Immunogenetics       Date:  1995       Impact factor: 2.846

10.  Mammalian gene evolution: nucleotide sequence divergence between mouse and rat.

Authors:  K H Wolfe; P M Sharp
Journal:  J Mol Evol       Date:  1993-10       Impact factor: 2.395

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