Literature DB >> 8576341

Escherichia coli O157:H7 restriction pattern recognition by artificial neural network.

C A Carson1, J M Keller, K K McAdoo, D Wang, B Higgins, C W Bailey, J G Thorne, B J Payne, M Skala, A W Hahn.   

Abstract

An artificial neural network model for the recognition of Escherichia coli O157:H7 restriction patterns was designed. In the training phase, images of two classes of E. coli isolates (O157:H7 and non-O157:H7) were digitized and transmitted to the neural network. The system was then tested for recognition of images not included in the training set. Promising results were achieved with the designed network configuration, providing a basis for further study. This application of a new generation of computation technology serves as an example of its usefulness in microbiology.

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Year:  1995        PMID: 8576341      PMCID: PMC228602          DOI: 10.1128/jcm.33.11.2894-2898.1995

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN: 0095-1137            Impact factor:   5.948


  11 in total

1.  An assessment of neural network and statistical approaches for prediction of E. coli promoter sites.

Authors:  P B Horton; M Kanehisa
Journal:  Nucleic Acids Res       Date:  1992-08-25       Impact factor: 16.971

2.  Virulence patterns and long-range genetic mapping of extraintestinal Escherichia coli K1, K5, and K100 isolates: use of pulsed-field gel electrophoresis.

Authors:  M Ott; L Bender; G Blum; M Schmittroth; M Achtman; H Tschäpe; J Hacker
Journal:  Infect Immun       Date:  1991-08       Impact factor: 3.441

3.  On fully automatic feature measurement for banded chromosome classification.

Authors:  J Piper; E Granum
Journal:  Cytometry       Date:  1989-05

4.  Separation of large DNA molecules by contour-clamped homogeneous electric fields.

Authors:  G Chu; D Vollrath; R W Davis
Journal:  Science       Date:  1986-12-19       Impact factor: 47.728

5.  Separation of yeast chromosome-sized DNAs by pulsed field gradient gel electrophoresis.

Authors:  D C Schwartz; C R Cantor
Journal:  Cell       Date:  1984-05       Impact factor: 41.582

6.  Comparison and genomic sizing of Escherichia coli O157:H7 isolates by pulsed-field gel electrophoresis.

Authors:  K D Harsono; C W Kaspar; J B Luchansky
Journal:  Appl Environ Microbiol       Date:  1993-09       Impact factor: 4.792

7.  Epidemiological study by pulsed-field gel electrophoresis of an outbreak of extended-spectrum beta-lactamase-producing Klebsiella pneumoniae in a geriatric hospital.

Authors:  A Gouby; C Neuwirth; G Bourg; N Bouziges; M J Carles-Nurit; E Despaux; M Ramuz
Journal:  J Clin Microbiol       Date:  1994-02       Impact factor: 5.948

8.  Computer-assisted pattern recognition model for the identification of slowly growing mycobacteria including Mycobacterium tuberculosis.

Authors:  B D Plikaytis; B B Plikaytis; T M Shinnick
Journal:  J Gen Microbiol       Date:  1992-11

9.  Rapid identification of species within the Mycobacterium tuberculosis complex by artificial neural network analysis of pyrolysis mass spectra.

Authors:  R Freeman; R Goodacre; P R Sisson; J G Magee; A C Ward; N F Lightfoot
Journal:  J Med Microbiol       Date:  1994-03       Impact factor: 2.472

10.  Resolution of recent evolutionary divergence among Escherichia coli from related lineages: the application of pulsed field electrophoresis to molecular epidemiology.

Authors:  R D Arbeit; M Arthur; R Dunn; C Kim; R K Selander; R Goldstein
Journal:  J Infect Dis       Date:  1990-02       Impact factor: 5.226

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  11 in total

1.  Single-base-pair discrimination of terminal mismatches by using oligonucleotide microarrays and neural network analyses.

Authors:  Hidetoshi Urakawa; Peter A Noble; Said El Fantroussi; John J Kelly; David A Stahl
Journal:  Appl Environ Microbiol       Date:  2002-01       Impact factor: 4.792

2.  Application of neural computing methods for interpreting phospholipid fatty acid profiles of natural microbial communities.

Authors:  P A Noble; J S Almeida; C R Lovell
Journal:  Appl Environ Microbiol       Date:  2000-02       Impact factor: 4.792

3.  Optimization of single-base-pair mismatch discrimination in oligonucleotide microarrays.

Authors:  Hidetoshi Urakawa; Said El Fantroussi; Hauke Smidt; James C Smoot; Erik H Tribou; John J Kelly; Peter A Noble; David A Stahl
Journal:  Appl Environ Microbiol       Date:  2003-05       Impact factor: 4.792

4.  Effects of repeated subculturing and prolonged storage at room temperature of enterohemorrhagic Escherichia coli O157:H7 on pulsed-field gel electrophoresis profiles.

Authors:  Atsushi Iguchi; Ro Osawa; Junichi Kawano; Akira Shimizu; Jun Terajima; Haruo Watanabe
Journal:  J Clin Microbiol       Date:  2002-08       Impact factor: 5.948

5.  Evaluation of gel-pad oligonucleotide microarray technology by using artificial neural networks.

Authors:  Alex Pozhitkov; Boris Chernov; Gennadiy Yershov; Peter A Noble
Journal:  Appl Environ Microbiol       Date:  2005-12       Impact factor: 4.792

6.  Natural Microbial Community Compositions Compared by a Back-Propagating Neural Network and Cluster Analysis of 5S rRNA.

Authors:  P A Noble; K D Bidle; M Fletcher
Journal:  Appl Environ Microbiol       Date:  1997-05       Impact factor: 4.792

7.  Comparison of statistical methods for identification of Streptococcus thermophilus, Enterococcus faecalis, and Enterococcus faecium from randomly amplified polymorphic DNA patterns.

Authors:  G Moschetti; G Blaiotta; F Villani; S Coppola; E Parente
Journal:  Appl Environ Microbiol       Date:  2001-05       Impact factor: 4.792

8.  Acinetobacter species identification by using tRNA spacer fingerprinting.

Authors:  B Ehrenstein; A T Bernards; L Dijkshoorn; P Gerner-Smidt; K J Towner; P J Bouvet; F D Daschner; H Grundmann
Journal:  J Clin Microbiol       Date:  1996-10       Impact factor: 5.948

Review 9.  Diarrheagenic Escherichia coli.

Authors:  J P Nataro; J B Kaper
Journal:  Clin Microbiol Rev       Date:  1998-01       Impact factor: 26.132

10.  Identification of Cryptosporidium parvum oocysts by an artificial neural network approach.

Authors:  Kenneth W Widmer; Kevin H Oshima; Suresh D Pillai
Journal:  Appl Environ Microbiol       Date:  2002-03       Impact factor: 4.792

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