Literature DB >> 11872458

Identification of Cryptosporidium parvum oocysts by an artificial neural network approach.

Kenneth W Widmer1, Kevin H Oshima, Suresh D Pillai.   

Abstract

Microscopic detection of Cryptosporidium parvum oocysts is time-consuming, requires trained analysts, and is frequently subject to significant human errors. Artificial neural networks (ANN) were developed to help identify immunofluorescently labeled C. parvum oocysts. A total of 525 digitized images of immunofluorescently labeled oocysts, fluorescent microspheres, and other miscellaneous nonoocyst images were employed in the training of the ANN. The images were cropped to a 36- by 36-pixel image, and the cropped images were placed into two categories, oocyst and nonoocyst images. The images were converted to grayscale and processed into a histogram of gray color pixel intensity. Commercially available software was used to develop and train the ANN. The networks were optimized by varying the number of training images, number of hidden neurons, and a combination of these two parameters. The network performance was then evaluated using a set of 362 unique testing images which the network had never "seen" before. Under optimized conditions, the correct identification of authentic oocyst images ranged from 81 to 97%, and the correct identification of nonoocyst images ranged from 78 to 82%, depending on the type of fluorescent antibody that was employed. The results indicate that the ANN developed were able to generalize the training images and subsequently discern previously unseen oocyst images efficiently and reproducibly. Thus, ANN can be used to reduce human errors associated with the microscopic detection of Cryptosporidium oocysts.

Entities:  

Mesh:

Substances:

Year:  2002        PMID: 11872458      PMCID: PMC123730          DOI: 10.1128/AEM.68.3.1115-1121.2002

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  7 in total

1.  Identification of phytoplankton from flow cytometry data by using radial basis function neural networks.

Authors:  M F Wilkins; L Boddy; C W Morris; R R Jonker
Journal:  Appl Environ Microbiol       Date:  1999-10       Impact factor: 4.792

Review 2.  Artificial neural networks: fundamentals, computing, design, and application.

Authors:  I A Basheer; M Hajmeer
Journal:  J Microbiol Methods       Date:  2000-12-01       Impact factor: 2.363

3.  Cryptosporidium: notes on epidemiology and pathogenesis.

Authors:  S Tzipori
Journal:  Parasitol Today       Date:  1985-12

4.  Technical note: interference of Br-, BrO3-, and ClO3- with DOX determination.

Authors:  J M Symons; R Xia
Journal:  J Am Water Works Assoc       Date:  1995-08

5.  Escherichia coli O157:H7 restriction pattern recognition by artificial neural network.

Authors:  C A Carson; J M Keller; K K McAdoo; D Wang; B Higgins; C W Bailey; J G Thorne; B J Payne; M Skala; A W Hahn
Journal:  J Clin Microbiol       Date:  1995-11       Impact factor: 5.948

6.  A massive outbreak in Milwaukee of cryptosporidium infection transmitted through the public water supply.

Authors:  W R Mac Kenzie; N J Hoxie; M E Proctor; M S Gradus; K A Blair; D E Peterson; J J Kazmierczak; D G Addiss; K R Fox; J B Rose
Journal:  N Engl J Med       Date:  1994-07-21       Impact factor: 91.245

7.  Identification of algae which interfere with the detection of Giardia cysts and Cryptosporidium oocysts and a method for alleviating this interference.

Authors:  M R Rodgers; D J Flanigan; W Jakubowski
Journal:  Appl Environ Microbiol       Date:  1995-10       Impact factor: 4.792

  7 in total
  3 in total

1.  Use of artificial neural networks to accurately identify Cryptosporidium oocyst and Giardia cyst images.

Authors:  Kenneth W Widmer; Deepak Srikumar; Suresh D Pillai
Journal:  Appl Environ Microbiol       Date:  2005-01       Impact factor: 4.792

Review 2.  Machine Learning and Deep Learning Based Computational Approaches in Automatic Microorganisms Image Recognition: Methodologies, Challenges, and Developments.

Authors:  Priya Rani; Shallu Kotwal; Jatinder Manhas; Vinod Sharma; Sparsh Sharma
Journal:  Arch Comput Methods Eng       Date:  2021-08-31       Impact factor: 8.171

Review 3.  Machine Learning and Its Applications for Protozoal Pathogens and Protozoal Infectious Diseases.

Authors:  Rui-Si Hu; Abd El-Latif Hesham; Quan Zou
Journal:  Front Cell Infect Microbiol       Date:  2022-04-28       Impact factor: 6.073

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.