Literature DB >> 8114066

Rapid identification of species within the Mycobacterium tuberculosis complex by artificial neural network analysis of pyrolysis mass spectra.

R Freeman1, R Goodacre, P R Sisson, J G Magee, A C Ward, N F Lightfoot.   

Abstract

An artificial neural network (ANN) was trained to distinguish between Mycobacterium tuberculosis and M. bovis with averaged pyrolysis mass spectra from duplicate subcultures of four strains of each of these species, each pyrolysed in triplicate. Once trained, the ANN was interrogated with spectrum data from the original organisms (the "training set") and from 26 other mycobacterial isolates (the "challenge set") of the M. tuberculosis complex (MTBC). Eight strains of M. bovis and 13 of M. tuberculosis, whether sensitive or variously resistant to antituberculosis drugs, were identified in agreement with conventional identification. Four strains of "M. africanum" were identified as M. bovis. Of two atypical M. tuberculosis strains from South India, one was identified as M. tuberculosis and the other as M. bovis. Six strains of BCG proved heterogeneous; two gave equivocal identifications, three were identified as M. bovis and one was identified as M. tuberculosis.

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Year:  1994        PMID: 8114066     DOI: 10.1099/00222615-40-3-170

Source DB:  PubMed          Journal:  J Med Microbiol        ISSN: 0022-2615            Impact factor:   2.472


  13 in total

1.  Single-base-pair discrimination of terminal mismatches by using oligonucleotide microarrays and neural network analyses.

Authors:  Hidetoshi Urakawa; Peter A Noble; Said El Fantroussi; John J Kelly; David A Stahl
Journal:  Appl Environ Microbiol       Date:  2002-01       Impact factor: 4.792

2.  Application of neural computing methods for interpreting phospholipid fatty acid profiles of natural microbial communities.

Authors:  P A Noble; J S Almeida; C R Lovell
Journal:  Appl Environ Microbiol       Date:  2000-02       Impact factor: 4.792

3.  Optimization of single-base-pair mismatch discrimination in oligonucleotide microarrays.

Authors:  Hidetoshi Urakawa; Said El Fantroussi; Hauke Smidt; James C Smoot; Erik H Tribou; John J Kelly; Peter A Noble; David A Stahl
Journal:  Appl Environ Microbiol       Date:  2003-05       Impact factor: 4.792

4.  Taxonomic discrimination of flowering plants by multivariate analysis of Fourier transform infrared spectroscopy data.

Authors:  S W Kim; S H Ban; H Chung; S Cho; H J Chung; P S Choi; O J Yoo; J R Liu
Journal:  Plant Cell Rep       Date:  2004-07-10       Impact factor: 4.570

5.  Rapid authentication of animal cell lines using pyrolysis mass spectrometry and auto-associative artificial neural networks.

Authors:  R Goodacre; D J Rischert; P M Evans; D B Kell
Journal:  Cytotechnology       Date:  1996-01       Impact factor: 2.058

6.  Evaluation of gel-pad oligonucleotide microarray technology by using artificial neural networks.

Authors:  Alex Pozhitkov; Boris Chernov; Gennadiy Yershov; Peter A Noble
Journal:  Appl Environ Microbiol       Date:  2005-12       Impact factor: 4.792

7.  Natural Microbial Community Compositions Compared by a Back-Propagating Neural Network and Cluster Analysis of 5S rRNA.

Authors:  P A Noble; K D Bidle; M Fletcher
Journal:  Appl Environ Microbiol       Date:  1997-05       Impact factor: 4.792

8.  High Resolution Separations and Improved Ion Production and Transmission in Metabolomics.

Authors:  Thomas O Metz; Jason S Page; Erin S Baker; Keqi Tang; Jie Ding; Yufeng Shen; Richard D Smith
Journal:  Trends Analyt Chem       Date:  2008-03       Impact factor: 12.296

9.  The future of liquid chromatography-mass spectrometry (LC-MS) in metabolic profiling and metabolomic studies for biomarker discovery.

Authors:  Thomas O Metz; Qibin Zhang; Jason S Page; Yufeng Shen; Stephen J Callister; Jon M Jacobs; Richard D Smith
Journal:  Biomark Med       Date:  2007-06       Impact factor: 2.851

10.  Comparison of statistical methods for identification of Streptococcus thermophilus, Enterococcus faecalis, and Enterococcus faecium from randomly amplified polymorphic DNA patterns.

Authors:  G Moschetti; G Blaiotta; F Villani; S Coppola; E Parente
Journal:  Appl Environ Microbiol       Date:  2001-05       Impact factor: 4.792

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